View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_high_24 (Length: 421)
Name: NF19379_high_24
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 41337514 - 41337911
Alignment:
| Q |
9 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
108 |
Q |
| |
|
||||| ||||| ||||| || |||||||||| |||||| ||||||| |||| |||||||| ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
41337514 |
acatcgtcaggaattgtgctatgggcgatgtcggagatgataaagaacccaatagtaatggaagaagcacaagttgaggtaagaagagtgtttgataaaa |
41337613 |
T |
|
| Q |
109 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
208 |
Q |
| |
|
|||||||||| || |||||||||||| | ||||| ||||||||| ||| |||||||||||||| | |||||||||||| ||| ||| ||||| | || |
|
|
| T |
41337614 |
aggggtatgtagacgagacagagttgcaacagttgacatacttaaagtgtgtcatcaaagaaacatttaggctacatcctactgtacctttgttggttcc |
41337713 |
T |
|
| Q |
209 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
308 |
Q |
| |
|
|||||||||||| ||||| || ||||||||| |||||| || ||||||||||| |||||| |||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
41337714 |
aagagaaagtagagagagatgtgaaatcaatgggtatgagatcccagctaagacaagggttgctgtcaatgtttgggcaattggaagagatccaaagtat |
41337813 |
T |
|
| Q |
309 |
tgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41337814 |
tgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaattaataccatttggtgctggaag |
41337911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 199 - 406
Target Start/End: Original strand, 41305235 - 41305442
Alignment:
| Q |
199 |
tgttactcccaagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagaga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41305235 |
tgttactcccaagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagaga |
41305334 |
T |
|
| Q |
299 |
ttcaaagtattgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggt |
398 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41305335 |
tccaaagtattgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggt |
41305434 |
T |
|
| Q |
399 |
gctggaag |
406 |
Q |
| |
|
|||||||| |
|
|
| T |
41305435 |
gctggaag |
41305442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 31 - 406
Target Start/End: Original strand, 41324819 - 41325194
Alignment:
| Q |
31 |
gggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacaga |
130 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||| | ||||||| ||||||||||||||| |
|
|
| T |
41324819 |
gggcgatatctgagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaagagtttttgataggaaggggtttgtggatgagacaga |
41324918 |
T |
|
| Q |
131 |
gttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgc |
230 |
Q |
| |
|
|||| | || || |||||||||||| | | ||||| |||||| | ||||||||||| | | ||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
41324919 |
gttgcaccaattgatatacttaaaatctgtgatcaaggaaacaatgaggctacatccaaccgtaccgttgttacttccaagagaaagtagggagagatgc |
41325018 |
T |
|
| Q |
231 |
caaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagtttta |
330 |
Q |
| |
|
|||||||||| |||||| || ||||||||||| ||||| || || ||||||||||| |||||||||||| ||| |||||||||||| ||||| ||||||| |
|
|
| T |
41325019 |
caaatcaatgggtatgaaatcccagctaagacaagggtcatggttaatgcttgggctattggaagagatccaaggtattgggttgatgctgaaagtttta |
41325118 |
T |
|
| Q |
331 |
aacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41325119 |
aacctgagaggtttgttaatagtccaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
41325194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 31 - 406
Target Start/End: Original strand, 41328796 - 41329171
Alignment:
| Q |
31 |
gggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacaga |
130 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
41328796 |
gggcgatgtctgagatggtgaagaacccaaaggtaatggaagaagcacaagatgaagtaagtagagtgtttgataaaaaggagtatgtggatgagacaga |
41328895 |
T |
|
| Q |
131 |
gttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgc |
230 |
Q |
| |
|
|||| | || || |||||||||| | |||||||||||||| | ||| | ||||| || |||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
41328896 |
gttgcaccaattgatatacttaaagtccgtcatcaaagaaacattgaggttgcatcccgttgcaccattgttagttccaagagaaagtagggagagatgc |
41328995 |
T |
|
| Q |
231 |
caaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagtttta |
330 |
Q |
| |
|
|||||||||| |||||| || ||||||||||| ||||| || || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41328996 |
caaatcaatgggtatgaaatcccagctaagacaagggtaatggttaatgcttgggctattggaagagattcaaggtattgggttgaagctgagagtttta |
41329095 |
T |
|
| Q |
331 |
aacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
41329096 |
aacctgagaggtttgttaatagtccaattgatttcaaaggcacggacttcgaattcataccatttggtgctggaag |
41329171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 41316733 - 41317130
Alignment:
| Q |
9 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
108 |
Q |
| |
|
||||| |||| || |||||| |||||||||||| |||| |||| || |||| |||||||| |||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
41316733 |
acatcgtcagaggctgtgatttgggcgatgtctgcgatggtaaaaaactcaaatgtaatggaacaagcacaagctgaagtaagaagagtgtttgataaaa |
41316832 |
T |
|
| Q |
109 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
208 |
Q |
| |
|
|||| ||||||||||||||||||||| | || || |||||||||| | | |||||||||||||| | ||| | ||||| || ||||||||| | || |
|
|
| T |
41316833 |
agggatatgtggatgagacagagttgtaccaattgatatacttaaagtctgtcatcaaagaaacattgaggttgtatcctgttgctccattgttagttcc |
41316932 |
T |
|
| Q |
209 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||| ||||| |||||| ||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
41316933 |
aagagaaagtagggagagatgccaaatcaatggttatgagattccagccaagacaagggttgctgtcaatgcttgggctattggaagagatccaaggtat |
41317032 |
T |
|
| Q |
309 |
tgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
41317033 |
tgggttgaagctgagagttttaaacctgagaggtttgttaatagcccaattgatttcaaaggcacggacttcgaattcataccatttggtgctggaag |
41317130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 31 - 406
Target Start/End: Original strand, 41332729 - 41333104
Alignment:
| Q |
31 |
gggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacaga |
130 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| |||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
41332729 |
gggcgatgtctgagatggtaaagaacccaaaggtattggaagaagcacagattgaagtaagaagagtgtttgataaaaaggggtatgtggatgagtcaga |
41332828 |
T |
|
| Q |
131 |
gttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgc |
230 |
Q |
| |
|
|||| | || || |||||||||| | | || ||||||||||| | ||| ||||||| || |||||||||| | ||||||||||||| | || ||| |
|
|
| T |
41332829 |
gttgcaccaattgatatacttaaagtctgtcgtcaaagaaacattgaggttacatcccgttgcaccattgttaattccaagagaaagtatgaagccatgc |
41332928 |
T |
|
| Q |
231 |
caaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagtttta |
330 |
Q |
| |
|
||||| |||| |||||| || ||||||||||| ||||| || || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41332929 |
caaattaatgggtatgaaatcccagctaagacaagggtaatggttaatgcttgggctattggaagagattcaaggtattgggttgaagctgagagtttta |
41333028 |
T |
|
| Q |
331 |
aacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
41333029 |
aacctgagaggtttgttaatagcacaattgaattcaaaggcacggacttcgaattcataccatttggtgctggaag |
41333104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 41286900 - 41287296
Alignment:
| Q |
9 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
108 |
Q |
| |
|
||||| ||||||| |||| || | | ||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||| | || |
|
|
| T |
41286900 |
acatcgtcaggggctgtgttatgagggatgtctgagatggtaaagaatccaaaggtgatggaa-aagcacaagctgaggtaagaagagtgtttgatagaa |
41286998 |
T |
|
| Q |
109 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
208 |
Q |
| |
|
|||||||||||| ||||||||||||| | || || ||||||| || | | | |||||||||||| | ||| | |||||| || ||||||||| | || |
|
|
| T |
41286999 |
aggggtatgtggttgagacagagttgcaccaattgatatacttgaagtctgttatcaaagaaacaatgaggttgcatcctgctataccattgttgattcc |
41287098 |
T |
|
| Q |
209 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
308 |
Q |
| |
|
||||||||||| | || |||||||| |||| |||||||| || || |||||||||||| |||||||||||||||| |||||||||||| ||| ||| |
|
|
| T |
41287099 |
aagagaaagtatgaagccatgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgcttgggcaattggaagagatccaagatat |
41287198 |
T |
|
| Q |
309 |
tgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41287199 |
tgggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaag |
41287296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 31178103 - 31177706
Alignment:
| Q |
9 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
108 |
Q |
| |
|
||||||||||| |||||| || ||| ||| ||||||||| ||||||| |||||| ||||| | ||||||||| ||| ||||||| ||||||||| |||| |
|
|
| T |
31178103 |
acatcatcaggagttgtgttatgggggatatctgagatgataaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaagtgtttgataaaa |
31178004 |
T |
|
| Q |
109 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
208 |
Q |
| |
|
||||| |||| ||||| ||||||||| | || || |||||||||| | ||| |||||||||||| ||||| | |||||| || ||| ||||| | || |
|
|
| T |
31178003 |
aggggcatgtcgatgaaacagagttgcaccatttgatatacttaaagtctataatcaaagaaacattaaggttgcatccttctttacctttgttgattcc |
31177904 |
T |
|
| Q |
209 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
308 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||| || |||||||| || || ||| | |||||| |||||| |||||||||||| || |||| |
|
|
| T |
31177903 |
aagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtat |
31177804 |
T |
|
| Q |
309 |
tgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| || ||||||||||| |
|
|
| T |
31177803 |
tgggcagaagctgagagttttaaacccgagaggtttgttaatagcacaattgatttcaaaggtacaaactttgagtacataccgttcggtgctggaag |
31177706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 34 - 406
Target Start/End: Original strand, 41366911 - 41367283
Alignment:
| Q |
34 |
cgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagtt |
133 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||| | ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
41366911 |
cgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaagttgaggtaagaagagtgtttgataaaaagggatatgtgaatgagacagagtt |
41367010 |
T |
|
| Q |
134 |
gaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaa |
233 |
Q |
| |
|
| | || || |||||||||||| |||||||||||||| | ||| | |||||| || |||||| || | ||||||||||||| | || |||||| |
|
|
| T |
41367011 |
gcaccaattgatatacttaaaatccgtcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacgaagccatgccaa |
41367110 |
T |
|
| Q |
234 |
atcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagttttaaac |
333 |
Q |
| |
|
|| ||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||| | | |||||||||||| || |||||||||| | |
|
|
| T |
41367111 |
ataaatagatatgatatcccagctaagacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaagagttttaagc |
41367210 |
T |
|
| Q |
334 |
ccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41367211 |
ctgagagatttcttaatagccgaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
41367283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 42 - 406
Target Start/End: Original strand, 41310967 - 41311335
Alignment:
| Q |
42 |
gagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtat----gtggatgagacagagttgaat |
137 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||| |||||| | |
|
|
| T |
41310967 |
gagatggtaaagaacccaaaggtaatggaagaagcacaagttgaagtaagaagagtgtttgataaaaaggggtatatatgtggatgagatggagttgcac |
41311066 |
T |
|
| Q |
138 |
cagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaatca |
237 |
Q |
| |
|
| ||| |||||||||| | | |||||||||||||||| ||| | ||||| || |||||||||| | |||||||||||||||||||| |||||||| | |
|
|
| T |
41311067 |
ctgttgatatacttaaagtttgtcatcaaagaaacactgaggttgcatccagttgcaccattgttagttccaagagaaagtagggagagatgccaaatta |
41311166 |
T |
|
| Q |
238 |
atgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagttttaaacccga |
337 |
Q |
| |
|
|| | |||| || ||| |||||| || || || | | ||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||| || |
|
|
| T |
41311167 |
ataggcatgagatcccaattaagacaagagtcgttattattgcttgggctattggaagagatccaaggtattgggttgaagctgagagatttaaacctga |
41311266 |
T |
|
| Q |
338 |
gaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41311267 |
gaggtttgttaatagcacaattgaattcaaaggcacggactttgaatacataccatttggtgctggaag |
41311335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 31188166 - 31187769
Alignment:
| Q |
9 |
acatcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaa |
108 |
Q |
| |
|
||||| || |||| |||| || ||| ||| ||||||||| ||||||| |||||| ||||||| |||||||| ||| ||||||| ||||||||| |||| |
|
|
| T |
31188166 |
acatcgtccggggctgtgctatgggggatatctgagatggtaaagaacccaaagataatggagaaagcacaagctgaagtaagaaaagtgtttgataaaa |
31188067 |
T |
|
| Q |
109 |
aggggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactccc |
208 |
Q |
| |
|
|||||||||| ||||| ||||||||| | || || |||||||||| | ||| |||| ||||||| | |||||||||||| ||| || ||||| | || |
|
|
| T |
31188066 |
aggggtatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataatcagagaaacattgaggctacatccttctgtgcctttgttggttcc |
31187967 |
T |
|
| Q |
209 |
aagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtat |
308 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||| || |||||||| || || ||| | |||||| |||||| |||||||||||| || |||| |
|
|
| T |
31187966 |
aagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtat |
31187867 |
T |
|
| Q |
309 |
tgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||| | |||||||||||||| || ||||||||||| |
|
|
| T |
31187866 |
tgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgctggaag |
31187769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 31225615 - 31226009
Alignment:
| Q |
12 |
tcatcaggggttgtgataagggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaagg |
111 |
Q |
| |
|
||||||||||||||| || ||| ||| ||||||||| ||||||| |||||| ||||||| ||||||||| ||| ||||||| ||||||| ||||||| |
|
|
| T |
31225615 |
tcatcaggggttgtgttatgggggatatctgagatggtaaagaacccaaagataatggaggaagcacaagctgaagtaagaaacatgtttgataaaaagg |
31225714 |
T |
|
| Q |
112 |
ggtatgtggatgagacagagttgaatcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaag |
211 |
Q |
| |
|
| |||| ||||| ||||||||| | || ||| |||||||||| | ||| || | ||||||| | || ||||||| ||| ||| ||||| | ||||| |
|
|
| T |
31225715 |
gacatgtcgatgaaacagagttgcaccaattaatatacttaaagtctataattagagaaacattgagattacatccatctgcacctttgttggttccaag |
31225814 |
T |
|
| Q |
212 |
agaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgg |
311 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||| || |||||||| || || ||| | |||||| |||||| |||||||||||| || ||||||| |
|
|
| T |
31225815 |
agaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgg |
31225914 |
T |
|
| Q |
312 |
gttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||| | |||||||||||||| || ||||||||||| |
|
|
| T |
31225915 |
gcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgctggaag |
31226009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 41431970 - 41432114
Alignment:
| Q |
31 |
gggcgatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacaga |
130 |
Q |
| |
|
||||||||||||||||| ||||| || || || ||||| ||||||||| ||||||||||||||||||||| | || ||||||||||||||||| || |
|
|
| T |
41431970 |
gggcgatgtctgagatggcgaagaacccgaatgtgatggaagaagcacaagctgaggtaagaagagtgtttgatatgaaagggtatgtggatgagactga |
41432069 |
T |
|
| Q |
131 |
gttgaatcagttactatacttaaaatgtatcatcaaagaaacact |
175 |
Q |
| |
|
|||| | | || ||||||| || | |||||||||||||||||| |
|
|
| T |
41432070 |
gttgcactaattgatatacttgaagtctatcatcaaagaaacact |
41432114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 14235879 - 14235962
Alignment:
| Q |
35 |
gatgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgt |
118 |
Q |
| |
|
|||||||||||| ||||||| || | ||| ||||| ||||||||| |||||||||||| | |||||| | |||||||||||| |
|
|
| T |
14235879 |
gatgtctgagattgtaaagaaccctagggtgatggaagaagcacaagctgaggtaagaagggagtttgatagaaaggggtatgt |
14235962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 41369921 - 41369958
Alignment:
| Q |
359 |
tgatttcaaaggcacagactttgaatacataccatttg |
396 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
41369921 |
tgatttcaaaggtatagactttgaatacataccatttg |
41369958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 36 - 406
Target Start/End: Complemental strand, 17248956 - 17248586
Alignment:
| Q |
36 |
atgtctgagatgttaaagaatccaaaggtaatggatgaagcacaaagtgaggtaagaagagtgtttgacaaaaaggggtatgtggatgagacagagttga |
135 |
Q |
| |
|
||||||||||| |||| || |||||||| ||||| | ||||||| |||||||||||| || ||||| | |||||||||||| ||||| || |||||| |
|
|
| T |
17248956 |
atgtctgagataataaaaaacccaaaggtgatggaagcagcacaagctgaggtaagaagtgtttttgatagaaaggggtatgtagatgaaacggagttgg |
17248857 |
T |
|
| Q |
136 |
atcagttactatacttaaaatgtatcatcaaagaaacactaaggctacatcctcctggaccattgttactcccaagagaaagtagggagagttgccaaat |
235 |
Q |
| |
|
|||| ||| |||||||||| | | |||||||||||||||| ||||| |||||| || ||||||||| | || ||| |||||||||| | || | ||| |
|
|
| T |
17248856 |
atcaattaatatacttaaattctgtcatcaaagaaacactgaggctgcatcctattgtaccattgttgattcctagacaaagtagggaaaaatgtcgaat |
17248757 |
T |
|
| Q |
236 |
caatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaagtattgggttgaagctgagagttttaaaccc |
335 |
Q |
| |
|
||| | ||||||||||||||||||||| |||||| ||| |||| |||||| |||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
17248756 |
caacgggtatgatattccagctaagacaagggttgctgttaatgtttgggcaattggaagagatcaaaggtattgggttgaagctgagagtttcaaacct |
17248657 |
T |
|
| Q |
336 |
gagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
|| |||||| |||||||| |||||||||||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
17248656 |
gaaaggttttttaatagcccaattgatttcaaaggcatgaatttcgaatacataccatttggtgctggaag |
17248586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 22986347 - 22986277
Alignment:
| Q |
336 |
gagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
||||||||| || |||| || |||||||||||||| || | ||||| ||||| ||||||||||||||||| |
|
|
| T |
22986347 |
gagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaag |
22986277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 23024435 - 23024374
Alignment:
| Q |
243 |
tatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagattcaaa |
304 |
Q |
| |
|
||||| |||||| ||||||||| ||| || |||||||||||||| |||| ||||||| |||| |
|
|
| T |
23024435 |
tatgacattccaactaagactaaggtgatagtcaatgcttgggcaattgcaagagatccaaa |
23024374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 22971999 - 22971951
Alignment:
| Q |
358 |
ttgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
406 |
Q |
| |
|
||||||||||||| ||| | ||||| ||||| ||||||||||||||||| |
|
|
| T |
22971999 |
ttgatttcaaaggaacaaattttgagtacattccatttggtgctggaag |
22971951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 15885829 - 15885867
Alignment:
| Q |
273 |
gtcaatgcttgggcgattggaagagattcaaagtattgg |
311 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
15885829 |
gtcaatgcatgggcgattggaagagatccaaagtattgg |
15885867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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