View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_28 (Length: 413)
Name: NF19379_high_28
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_28 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 42519484 - 42519087
Alignment:
| Q |
1 |
tcatttgcatgactgcagcatgtgaaggcttaatctttggttatgatcttggcatttcaggtacaatattctaannnnnnnnnnnnnnnnnnccatttaa |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42519484 |
tcatttgcatgactgcagcatgtggaggcttaatctttggttatgatcttggcatttcaggtacaatattctaatttattttcttcttttttccatttaa |
42519385 |
T |
|
| Q |
101 |
gtgtttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519384 |
gtgtttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatgg |
42519285 |
T |
|
| Q |
201 |
atccattcttaatgaagttctttccagatgtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519284 |
atccattcttaatgaagttctttccagatgtttatgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaac |
42519185 |
T |
|
| Q |
301 |
tctgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42519184 |
tctgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccactgtaactagaatctttggaagacgtcttaccatgctctctg |
42519087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 398
Target Start/End: Complemental strand, 1241248 - 1240866
Alignment:
| Q |
5 |
ttgcatgactgcagcatgtgaaggcttaatctttggttatgatcttggcatttcaggtacaatattctaannnnnnnnnnnnnnnnnnccatttaagtgt |
104 |
Q |
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|||||||| |||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||| | ||| |||||||| |
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| T |
1241248 |
ttgcatgattgcagcatttgaaggcttaatcttcggctatgatcttggcctttcaggtacaatattctcatttt--------------ccaattaagtgt |
1241163 |
T |
|
| Q |
105 |
ttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatcc |
204 |
Q |
| |
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||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1241162 |
ttgccaaa-tatgtctcaagaattgttcatatgacaataattttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatcc |
1241064 |
T |
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| Q |
205 |
at----tcttaatgaagttctttccagatgtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaac |
300 |
Q |
| |
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|| |||| |||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
1241063 |
atccattcttgctgaagttctttccagatgtttaggctaaggagctaaacattaagcctaccgataatcaatactgcaaattcgacagtcagacactaac |
1240964 |
T |
|
| Q |
301 |
tctgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
1240963 |
gttgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgcaactagaatctttggaagacatcttaccatgctctctg |
1240866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 42550903 - 42550991
Alignment:
| Q |
303 |
tgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatg |
391 |
Q |
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||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| |||||| || |||||||| ||||| |||||| |
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| T |
42550903 |
tgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatg |
42550991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 398
Target Start/End: Complemental strand, 41972877 - 41972499
Alignment:
| Q |
5 |
ttgcatgactgcagcatgtgaaggcttaatctttggttatgatcttggcatttcaggtacaatattctaannnnnnnnnnnnnnnnnnccatttaagtgt |
104 |
Q |
| |
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|||||||| |||||||| || |||||||||||| || ||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
41972877 |
ttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcatttcaggtacaatattctcatttt--------------ccattgaagtgt |
41972792 |
T |
|
| Q |
105 |
ttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatcc |
204 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41972791 |
ttgacaaaatatgtctcaagaattgttcatatgacaataattttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatcc |
41972692 |
T |
|
| Q |
205 |
attcttaatgaagttctttccagatgtttacgctaagcagctaaacattaagcctgcagataatcaatactgcaaattcgacagtcagacactaactctg |
304 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || || |
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| T |
41972691 |
attcttgctgaagttctttccagatgtttaggctaaggagctaaacattaagcctacggataatcaatactgcaaattcgacagtcagacact-acgttg |
41972593 |
T |
|
| Q |
305 |
tttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
398 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41972592 |
tttacatcctctttgtatttggccgctcttgtggattctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctg |
41972499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 185 - 1
Alignment:
| Q |
5 |
ttgcatgactgcagcatgtgaaggcttaatctttggttatgatcttggcatttcaggtacaatattctaannnnnnnnnnnnnnnnnnccatttaagtgt |
104 |
Q |
| |
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|||||||| |||||||| || |||||||||||| || ||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
185 |
ttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcatttcaggtacaatattctcatttt--------------ccattgaagtgt |
100 |
T |
|
| Q |
105 |
ttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatgataatgaattaatgtataggtggagttacggcaatggatc |
203 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
99 |
ttgacaaaatatgtctcaagaattgttcatatgacaataattttctgattaattacatgataaacaattaatgtataggtggagttacggcaatggatc |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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