View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_high_31 (Length: 402)
Name: NF19379_high_31
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 54230961 - 54230575
Alignment:
| Q |
14 |
catcacaggcacccttaattttaaagttaacaagaccatcttcggtgacaagaaaagttttcttagcaagtacagtatagcgtaacttgtcatttctagc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54230961 |
catcacaggcacccttaattttaaagttaacaagaccatcttcggtgacaagaaaagttttcttagcaagtacagtatagcgtaacttgtcatttctagc |
54230862 |
T |
|
| Q |
114 |
atatcgcttctctccaacattgttaagtttatcatattgcactcctacaccaagggtggctgataactacaacaacagtgtcccattat-------tatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
54230861 |
atatcgcttctctccaacattgttaagcttatcatattgcactcctacaccaagggtggctgataactacaacaacagtgtcccaacataaacaactatt |
54230762 |
T |
|
| Q |
207 |
aattaagtagtattgtaaattaaatgaaaatgaagac------attactattactagatacatacatctggatagaaatgtcgaacgagggcacgcaaag |
300 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54230761 |
aatcaa-tagtattgtaaattaaatgaaaatgaagacattactattactattactagatacatacatctggatagaaatgtcgaacgagggcacgcaaag |
54230663 |
T |
|
| Q |
301 |
aattaggttgtccattttttgtgtcaagctctccgcgaaccttgttgggataacaaacacaaattgttgagtatcttgaatgaattat |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54230662 |
aattaggttgtccattttttgtgtcaagctctccgcgaaccttgttgggataacaaacacagattgttgagtatcttgaatgaattat |
54230575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University