View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_33 (Length: 396)
Name: NF19379_high_33
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 390
Target Start/End: Original strand, 54507674 - 54508057
Alignment:
| Q |
10 |
agatgaaacttattagatgaaaaggttacatgcaacattgcacgtacatttatgagtgaaggcgtgtcccaacatctgacatgtaacgtgtctaatgcat |
109 |
Q |
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| T |
54507674 |
agatgaaacttattagatgaaaaggttccatgcaacattgcacgtacatttatgagtaaaagtgtgtcccaacatctgacaagtaatgtgtctaatgcat |
54507773 |
T |
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| Q |
110 |
gttcaatgtttcataggttacatgcatgtcaccgcatgacatgtttattatgttttgtaaaattcattttacctatcacttttagtattttcaatgtgag |
209 |
Q |
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| T |
54507774 |
gttcaatgtttcataggttacatgcatgtcaccgcatgacatgtttattatgttttgtaaaattcattttacctatcacttttagtattttcaatgtaag |
54507873 |
T |
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| Q |
210 |
aactgc---tannnnnnnnaatacattcattcacgaccaatcccaatggtttttgtgccttatttgtgatttgaatgaataaactctaatacaatattag |
306 |
Q |
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| T |
54507874 |
aactgctgtttttttttttaatgcattcattcacgaccaatcccaatgttttttgtgccttatttgtgatttgaatgaataaactctaatacaatattag |
54507973 |
T |
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| Q |
307 |
atttttatatttggtctaaatcattttttaaaatcctgtcaatgtgaaattcaagtttttcctatgagaaaaagatcacgaatc |
390 |
Q |
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| T |
54507974 |
atttttatatttggtctaaatcattttttaaaatcttgtcaatgtgaaattcaagtttttcctatgagaaaaagatcacgaatc |
54508057 |
T |
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