View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_34 (Length: 395)
Name: NF19379_high_34
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_34 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 395
Target Start/End: Original strand, 362666 - 363048
Alignment:
| Q |
10 |
aagaaaattccaacaagctgacatcaaacacacacaccacaacaaacctaatcactattactgtctaaaataaactgaacatagatattgatggagtact |
109 |
Q |
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| T |
362666 |
aagaaaattccaacaagctgacatcaaacacacacaccacaacaaacctaatcactattactgtataaaataaactgaacatagatattgatggagtact |
362765 |
T |
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| Q |
110 |
ttcaatggtgaaaaacaacctatcaccaattttgacattcctctcctaaatgaacttgcaccaaccaccaactagatatctcttacgtggaatcatgctc |
209 |
Q |
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| T |
362766 |
ttcaatgatgaaaaacaacctatcaccaattttgacattcctctcctaaataaacttgcaccaaccaccaactagatatctcttatgtggaatcatgctc |
362865 |
T |
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| Q |
210 |
tttggaaccaacactgttcacaaagcnnnnnnnnnnnnngttataatatcatacattatgaacttaataggaaaacataacttatttcaataataatcaa |
309 |
Q |
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| T |
362866 |
tttggaacctacactgttcacaaagc--aaaaaaaaaaagttataatatcatacattatgaaattaataggaaaacataacttatttcaataataatcaa |
362963 |
T |
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| Q |
310 |
ttgatgaagcatattgatannnnnnnnccacgcgcctctatagataggaatctactactatttgtaatcataaagatttaaaatca |
395 |
Q |
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| T |
362964 |
ttgatgaagcatattgata-tttttttccacgcgcctctatagataggaatctactaatatttgtaatcataaagatttaaaatca |
363048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 41024362 - 41024141
Alignment:
| Q |
12 |
gaaaattccaacaagctgacatcaaacacacacaccacaacaaacctaat---------cactattactgtctaaaataaactgaacatagatattgatg |
102 |
Q |
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| T |
41024362 |
gaaaattccaacaagctgacagcaaacacacaaaccacaataaacctaattactataatcactatcactgtctaaaataaaccgaacataaatattgttg |
41024263 |
T |
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| Q |
103 |
gagtactttcaatggtgaaaaacaacctatcaccaattttgacattcctctcctaaatgaacttgcaccaaccaccaactagatatctcttacgtggaat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
41024262 |
gagtactttcaatggtgaaaaacaacctatcaccaattttggcattcctgtcctgaatgaacttgcaccaaccactaactagatatctcttatgtggaat |
41024163 |
T |
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| Q |
203 |
catgctctttggaaccaacact |
224 |
Q |
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| T |
41024162 |
catgctctttggaaccaacact |
41024141 |
T |
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