View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_high_39 (Length: 376)

Name: NF19379_high_39
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_high_39
NF19379_high_39
[»] scaffold0036 (1 HSPs)
scaffold0036 (16-334)||(49957-50273)
[»] chr5 (6 HSPs)
chr5 (35-334)||(38015690-38015987)
chr5 (26-265)||(33013655-33013892)
chr5 (182-257)||(24539689-24539764)
chr5 (67-123)||(36391878-36391933)
chr5 (32-100)||(29864168-29864237)
chr5 (187-240)||(37336745-37336798)
[»] scaffold0380 (1 HSPs)
scaffold0380 (16-334)||(14536-14850)
[»] chr2 (14 HSPs)
chr2 (33-334)||(3395207-3395507)
chr2 (25-334)||(5788619-5788926)
chr2 (25-265)||(36720167-36720405)
chr2 (135-233)||(36729131-36729229)
chr2 (67-124)||(19040926-19040982)
chr2 (144-265)||(14868922-14869043)
chr2 (67-124)||(39838889-39838945)
chr2 (57-116)||(29976443-29976503)
chr2 (75-123)||(39404851-39404899)
chr2 (144-252)||(45658593-45658701)
chr2 (182-236)||(19994330-19994384)
chr2 (26-94)||(6911547-6911615)
chr2 (75-123)||(19044917-19044965)
chr2 (75-123)||(39835434-39835482)
[»] chr8 (25 HSPs)
chr8 (16-334)||(10901183-10901497)
chr8 (32-240)||(21588593-21588799)
chr8 (236-334)||(23141752-23141850)
chr8 (144-265)||(15630622-15630743)
chr8 (33-123)||(15342058-15342145)
chr8 (33-123)||(15431123-15431210)
chr8 (33-123)||(15522427-15522514)
chr8 (236-334)||(42797242-42797340)
chr8 (18-124)||(30254923-30255028)
chr8 (236-334)||(13756568-13756666)
chr8 (144-252)||(15277608-15277716)
chr8 (144-252)||(15457977-15458085)
chr8 (144-252)||(43217437-43217545)
chr8 (16-109)||(20874772-20874866)
chr8 (135-206)||(758194-758265)
chr8 (20-109)||(12157472-12157562)
chr8 (16-94)||(12158436-12158514)
chr8 (16-62)||(19261671-19261717)
chr8 (67-124)||(38290766-38290824)
chr8 (16-109)||(45245525-45245619)
chr8 (16-61)||(361309-361354)
chr8 (32-100)||(16248324-16248393)
chr8 (32-100)||(16311537-16311606)
chr8 (32-100)||(34802513-34802582)
chr8 (18-101)||(14375233-14375317)
[»] chr4 (12 HSPs)
chr4 (33-334)||(13228724-13229022)
chr4 (32-240)||(39974966-39975172)
chr4 (26-240)||(282042-282254)
chr4 (48-236)||(49952805-49952985)
chr4 (69-265)||(42757373-42757567)
chr4 (26-124)||(22680247-22680347)
chr4 (25-248)||(42729223-42729443)
chr4 (144-252)||(24183291-24183399)
chr4 (69-114)||(27741210-27741255)
chr4 (204-252)||(2041174-2041222)
chr4 (184-264)||(13909885-13909965)
chr4 (188-240)||(50158280-50158332)
[»] scaffold0159 (1 HSPs)
scaffold0159 (25-334)||(32992-33299)
[»] chr1 (11 HSPs)
chr1 (16-334)||(43386850-43387154)
chr1 (67-167)||(31090102-31090199)
chr1 (68-124)||(20306534-20306590)
chr1 (67-124)||(1992651-1992707)
chr1 (67-124)||(30001543-30001599)
chr1 (67-124)||(40946748-40946804)
chr1 (182-240)||(8313295-8313353)
chr1 (144-252)||(16852074-16852182)
chr1 (16-61)||(21467469-21467514)
chr1 (75-123)||(29998091-29998139)
chr1 (32-103)||(49881270-49881342)
[»] chr3 (14 HSPs)
chr3 (32-237)||(36096235-36096438)
chr3 (236-334)||(50331915-50332013)
chr3 (144-251)||(9261577-9261684)
chr3 (67-124)||(20934797-20934854)
chr3 (144-246)||(6436033-6436135)
chr3 (16-61)||(2251236-2251281)
chr3 (16-109)||(14233044-14233137)
chr3 (67-124)||(32976271-32976328)
chr3 (16-62)||(52070-52116)
chr3 (135-169)||(38352582-38352616)
chr3 (135-252)||(432082-432199)
chr3 (201-238)||(21320512-21320549)
chr3 (67-124)||(42400184-42400240)
chr3 (75-123)||(42396730-42396778)
[»] chr6 (15 HSPs)
chr6 (16-277)||(26894969-26895233)
chr6 (139-298)||(29214143-29214302)
chr6 (240-334)||(1599714-1599808)
chr6 (67-124)||(7428286-7428342)
chr6 (67-124)||(16278881-16278937)
chr6 (67-124)||(28315887-28315943)
chr6 (139-240)||(15634017-15634118)
chr6 (32-100)||(23408351-23408420)
chr6 (144-257)||(24175116-24175229)
chr6 (18-123)||(3531777-3531882)
chr6 (16-61)||(16707635-16707680)
chr6 (20-109)||(10191370-10191461)
chr6 (75-123)||(16275430-16275478)
chr6 (75-123)||(22826570-22826618)
chr6 (75-123)||(28319316-28319364)
[»] scaffold1315 (1 HSPs)
scaffold1315 (69-265)||(612-806)
[»] scaffold1293 (1 HSPs)
scaffold1293 (69-265)||(1265-1459)
[»] scaffold0024 (1 HSPs)
scaffold0024 (193-323)||(47073-47203)
[»] scaffold0191 (1 HSPs)
scaffold0191 (182-246)||(5272-5336)
[»] scaffold1750 (1 HSPs)
scaffold1750 (67-124)||(85-141)
[»] chr7 (9 HSPs)
chr7 (67-124)||(43989912-43989969)
chr7 (67-123)||(3633884-3633940)
chr7 (144-252)||(6187978-6188086)
chr7 (144-252)||(6194494-6194602)
chr7 (67-121)||(5785718-5785772)
chr7 (16-104)||(42078476-42078565)
chr7 (135-257)||(26374474-26374596)
chr7 (75-123)||(6678153-6678201)
chr7 (69-109)||(18347929-18347969)
[»] scaffold0287 (1 HSPs)
scaffold0287 (67-123)||(12145-12201)
[»] scaffold0051 (1 HSPs)
scaffold0051 (16-103)||(17582-17669)
[»] scaffold0114 (1 HSPs)
scaffold0114 (18-123)||(822-928)
[»] scaffold0169 (1 HSPs)
scaffold0169 (69-114)||(2473-2518)
[»] scaffold0284 (2 HSPs)
scaffold0284 (207-247)||(8586-8626)
scaffold0284 (207-247)||(8741-8781)
[»] scaffold0038 (1 HSPs)
scaffold0038 (75-123)||(110422-110470)


Alignment Details
Target: scaffold0036 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 49957 - 50273
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaac 115  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49957 agaccaaaagtgaaggaatttaaaataattgaggttgaatcaaaaattgcttgaaagtgaatgacatcccaaaactaaaatttaagatacaaaattaaac 50056  T
Q  116 acatgacacnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaa 215  Q
    |||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50057 acatgacacaaaaaaaa--ctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcataacattaggctaagagcaa 50154  T
Q  216 gcacacaagtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50155 gcacacaagtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactattgcat 50254  T
Q  316 tcaacgtgttattttaact 334  Q
    |||||||||||||||||||    
T  50255 tcaacgtgttattttaact 50273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 35 - 334
Target Start/End: Original strand, 38015690 - 38015987
Alignment:
Q  35 ttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacacnnnnnnnnnn 134  Q
    |||||||||| |||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||| ||||||               
T  38015690 ttaaaataatagaggttgaataaaaatttgcttgaaaacgaataacatcccaaaactaaaatttaagacacagaattaaacaaatgaca--acaaaaaaa 38015787  T
Q  135 ctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgac 234  Q
    ||||||||||||||| |||||||||||||| |||||||  ||||| | ||| |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  38015788 ctaacaaaacaaatcgtcataatgttgggaatttcgtgggaacctttgttgggttgtatcataacattaggctaaaagcaagcacacaagtgagattgac 38015887  T
Q  235 atcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 334  Q
    |||||||||||||||||| |||| || |||| ||||| ||||| |||||  |||||||||| || ||||||||||| |||||||| ||||||||||||||    
T  38015888 atcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgttattttaact 38015987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 26 - 265
Target Start/End: Original strand, 33013655 - 33013892
Alignment:
Q  26 tgaaggaatttaaaataattgaggttgaatgaaaaa-ttgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    ||||| ||||||||||||| |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  33013655 tgaagaaatttaaaataatagaggttgaataaaaaaattgcatggaagcgaatgacatcccaaaactaaaatttaaaatacaaaatttaacaaatgacac 33013754  T
Q  125 nnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaag 224  Q
              ||||||||||||||||| |||||||||||||||| |||  |||||||||||  ||||||||| ||||||| |||| |||||||||| |||    
T  33013755 caaaaaa---ctaacaaaacaaatcataataatgttgggacttttgtgggaacctgtattggattgtatcataacattagactaaaagcaagcacataag 33013851  T
Q  225 tgagattgacatcacaacttcacccaaattcttgagacatt 265  Q
    ||||||||||||||||| | || |||| ||||| |||||||    
T  33013852 tgagattgacatcacaattacatccaagttcttaagacatt 33013892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 24539764 - 24539689
Alignment:
Q  182 attgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaacttcacccaaattctt 257  Q
    |||| ||||||| || | |||||||||||| ||| ||||||||||||||||||| |||| ||||||||||| ||||    
T  24539764 attgggttgtataatcatattaggctaagatcaaccacacaagtgagattgacaacacatcttcacccaaagtctt 24539689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 36391933 - 36391878
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    ||||||||| |||||||||||||||||| ||||||| | ||||||||||| ||||||    
T  36391933 tgaaagcgagtgacatcccaaaactaaattttaaga-aaaaaattaaacaaatgaca 36391878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 29864168 - 29864237
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaatt-gcttgaaagcgaatgacatcccaaaactaaaatttaa 100  Q
    ||||||||||||| || ||||||| ||||| | || | ||| |||||||||||| |||||||||||||||    
T  29864168 aatttaaaataatagatgttgaataaaaaaatagcatcaaaacgaatgacatccaaaaactaaaatttaa 29864237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 37336798 - 37336745
Alignment:
Q  187 gttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcaca 240  Q
    ||||||| |||||||||||||||||||||  ||| |||||||| | ||||||||    
T  37336798 gttgtattattacattaggctaagagcaattacataagtgagactcacatcaca 37336745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 14850 - 14536
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaac 115  Q
    |||||||| |||||||||||||||||||| |||||||||| ||  |||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  14850 agaccaaaagtgaaggaatttaaaataatagaggttgaataaattattgctcgaaagcgaatg-catcccaaaactaaattttaagatataaaattaaac 14752  T
Q  116 acatgacacnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaa 215  Q
      |  ||||          |||| ||||||||||||||||||||||| | ||||||| ||||||||||||  ||||||||| ||||| ||||||| | ||    
T  14751 gaaaaacaccaaaaaa---ctaataaaacaaatcatcataatgttggaattttcgtggaaacctgtattggattgtatcataacatttggctaagtgaaa 14655  T
Q  216 gcacacaagtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcat 315  Q
     ||||||| |||||||||||||||||||||||||||| |||| |||||||  |||| ||||| |||||  ||||||||||||| ||||||||||| ||||    
T  14654 acacacaaatgagattgacatcacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgttcaacatctactattgcat 14555  T
Q  316 tcaacgtgttattttaact 334  Q
    |||| ||||||||||||||    
T  14554 tcaatgtgttattttaact 14536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 33 - 334
Target Start/End: Original strand, 3395207 - 3395507
Alignment:
Q  33 atttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacacnnnnnnnn 132  Q
    |||||| |||||  ||||||| | |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||            
T  3395207 atttaatataataaaggttgattaaaaaattgcttgaaaatgaatgacatcccaaaactaaaatttaagatacaaaattaaacaaatgacacaaaaaaaa 3395306  T
Q  133 nnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattg 232  Q
      ||||||||||||||||||||| ||||| ||||||| ||  ||||| |||| ||||||||| | |||||||| ||| ||||| ||||||||| ||||||    
T  3395307 a-ctaacaaaacaaatcatcatagtgttgagactttcatgggaacctttattcagttgtatcgtaacattaggataaaagcaaacacacaagtaagattg 3395405  T
Q  233 acatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaa 332  Q
    |||||||||||||||||||| |||| ||||||| ||||| ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||||||||    
T  3395406 acatcacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgttattttaa 3395505  T
Q  333 ct 334  Q
    ||    
T  3395506 ct 3395507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 5788619 - 5788926
Alignment:
Q  25 gtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||| ||||||||||||| |||||| ||| ||||||||||| | | | |||||||||| |||||||||||||||||||||||||||| || |  | |     
T  5788619 gtgaagaaatttaaaataatagaggttaaataaaaaattgcttaacaacaaatgacatccaaaaactaaaatttaagatacaaaattaa-caaaacaaa- 5788716  T
Q  125 nnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagc--acaca 222  Q
              |||||||| |||||||||||||| ||| ||||||||||  || || ||||| |||||||||  |||||||||| | |||||||  |||||    
T  5788717 taaaaaaaaactaacaaaccaaatcatcataattttgagactttcgtgggaaactttattgggttgtatcacaacattaggctgaaagcaagcgcacaca 5788816  T
Q  223 agtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgt 322  Q
    ||| |||||||||||||||||||||||||| |||| ||||||| ||||  ||||| |||||  ||||||||||||| ||||||||||| |||||||| ||    
T  5788817 agtaagattgacatcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgt 5788914  T
Q  323 gttattttaact 334  Q
    ||||||||||||    
T  5788915 gttattttaact 5788926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 36720405 - 36720167
Alignment:
Q  25 gtgaaggaatttaaaataattgaggttgaatgaaaaat-tgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||| |||||||||||||||||||||||  |||||  ||  |||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||    
T  36720405 gtgaagaaatttaaaataattgaggttgaagaaaaaaaatgtatgaaagcgaatgacatccaaaaattaaaatttaagataaaaaattaaacaaatgaca 36720306  T
Q  124 cnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcg-tgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacaca 222  Q
               |||||||| ||||| ||||||||||| ||| ||||| ||  | ||| ||||||| |||||  | | ||||| ||||||||||  |||||    
T  36720305 ---tataaaaactaacaaaccaaatgatcataatgtt-ggaatttcgttgcgagcctatattgagctgtattgtaatattagtctaagagcaactacaca 36720210  T
Q  223 agtgagattgacatcacaacttcacccaaattcttgagacatt 265  Q
    | | |||||||||||||| ||||||||||| |||| |||||||    
T  36720209 aattagattgacatcacatcttcacccaaagtcttcagacatt 36720167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 36729131 - 36729229
Alignment:
Q  135 ctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattga 233  Q
    ||||||||||||||||||||||| || || |||| |||||| | |  | ||||||||||||| | |||||||||||| ||| || |||||||| |||||    
T  36729131 ctaacaaaacaaatcatcataatatttggtcttttgtgaaagcatacaatgagttgtatcatcatattaggctaagaccaatcatacaagtgaaattga 36729229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 19040982 - 19040926
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  19040982 tgaaagcgaatgacattcaaaaactaaaatttaagata-aaaattaaacaaatgacac 19040926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 14869043 - 14868922
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||  |||| |  ||  |||||||||||| || ||||||| |||||||||| ||||| |||||| || | |||| | ||    
T  14869043 caaattatcataatgttgggacttctgtgagattctaaattgagttgtatgatcacattagcctaagagcaatcacacgagtgagtttaatatcaaatct 14868944  T
Q  244 tcacccaaattcttgagacatt 265  Q
    ||| ||||| |||  |||||||    
T  14868943 tcatccaaagtctcaagacatt 14868922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 39838889 - 39838945
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | |||||||||||||| |||| ||||||||||| |||||||    
T  39838889 tgaaagcgaatgacattcaaaaactaaaatttatgata-aaaattaaacaaatgacac 39838945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 29976443 - 29976503
Alignment:
Q  57 aaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagat-acaaaattaaaca 116  Q
    |||||| || |||||||||||||||||| | |||||||||||||||| | |||||||||||    
T  29976443 aaaaatagcatgaaagcgaatgacatccaataactaaaatttaagatgaaaaaattaaaca 29976503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 39404851 - 39404899
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||||    
T  39404851 aatgacatccaataactaaaatttaagataaaaaattaaacaaatgaca 39404899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 45658701 - 45658593
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| |||||||| |||||||||  |||| |  ||  |||||||||||| || ||||||| ||||||| || ||||| | ||||||| |||||||| ||    
T  45658701 caaattatcataatcttgggacttatgtgagagtctaaattgagttgtatgatcacattagcctaagagtaatcacacgattgagattaacatcacatct 45658602  T
Q  244 tcacccaaa 252  Q
    ||| |||||    
T  45658601 tcatccaaa 45658593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 19994330 - 19994384
Alignment:
Q  182 attgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacat 236  Q
    |||| ||||||| || ||||||  |||||||||| ||||||||||||||||||||    
T  19994330 attgggttgtattataacattaaactaagagcaatcacacaagtgagattgacat 19994384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 6911615 - 6911547
Alignment:
Q  26 tgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaa 94  Q
    ||||| ||||||||||||| |||||||||| |||||| || | |||| ||| || |||| |||||||||    
T  6911615 tgaagaaatttaaaataatagaggttgaataaaaaatagcattaaagagaaagaaatccaaaaactaaa 6911547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 19044965 - 19044917
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||||    
T  19044965 aatgacatccaataactaaattttaagataaaaaattaaacaaatgaca 19044917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 39835434 - 39835482
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||||    
T  39835434 aatgacatccaataactaaattttaagataaaaaattaaacaaatgaca 39835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 10901183 - 10901497
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaac 115  Q
    |||||| | |||||||||||||| | ||| | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  10901183 agaccagaagtgaaggaatttaatacaatagtggttgaataaaaaattgcttgaaagtgaatgacatcccaaaactaaaatttaagata-aaaattaaac 10901281  T
Q  116 acatgacacnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaa 215  Q
    | |||||||          ||||||||||||||||||||||||||  ||||||||||  ||||| ||||  |||||||| | | ||||||  || ||||     
T  10901282 aaatgacaccaaaaaa---ctaacaaaacaaatcatcataatgttaagactttcgtgggaacctttattcggttgtatcttaatattaggtcaaaagcac 10901378  T
Q  216 gcacacaagtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcat 315  Q
    |||||||||| |||||||||||||||||||||||||| |||| | ||||| |||||  |||| |||||  || ||||||  || ||||||||||| ||||    
T  10901379 gcacacaagtaagattgacatcacaacttcacccaaaatcttaacacattagatatacgagtcatctcacttgtatgttactcaacatctactattgcat 10901478  T
Q  316 tcaacgtgttattttaact 334  Q
    |||| ||||||||||||||    
T  10901479 tcaatgtgttattttaact 10901497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 21588593 - 21588799
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaa-ttgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacacnnnnnn 130  Q
    ||||||||||||| |||||||||| ||||| |||| || |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||          
T  21588593 aatttaaaataatagaggttgaataaaaaaattgcatggaagcgaatgacatctcaaaactaaaatttaagatacaaaatttaacaaatgacaccataat 21588692  T
Q  131 nnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagat 230  Q
         |||||||||||||||| ||||||||| |||||| |||  |||||||||||  || |||||| ||||||| |||| ||||| |||| |||||||||    
T  21588693 at---taacaaaacaaatcataataatgttgagacttttgtgggaacctgtattggattctatcataacattagactaaaagcaaacacaaaagtgagat 21588789  T
Q  231 tgacatcaca 240  Q
    ||||||||||    
T  21588790 tgacatcaca 21588799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 23141752 - 23141850
Alignment:
Q  236 tcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 334  Q
    ||||||||||||||||| |||| ||||||| ||||  ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||||||||||    
T  23141752 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcatttatatgtttctcaacatctactattgcattcaatgtgttattttaact 23141850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 15630743 - 15630622
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||| |||| |  ||  |||||||||||| || ||||||| |||||||||| ||||| ||||||||| | |||||| ||    
T  15630743 caaattatcataatgttgggacttttgtgagattctaaattgagttgtatgatcacattagcctaagagcaatcacacgagtgagattaatatcacatct 15630644  T
Q  244 tcacccaaattcttgagacatt 265  Q
    ||| ||||| |||  |||||||    
T  15630643 tcatccaaagtctcaagacatt 15630622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 15342058 - 15342145
Alignment:
Q  33 atttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||| ||||||| ||||||||||||||||     |||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||    
T  15342058 atttgaaataatggaggttgaatgaaaaaaa---tgaaagcgaatgacatccaataactaaaatttaagataaaaaattaaacaaatgaca 15342145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 15431123 - 15431210
Alignment:
Q  33 atttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||| ||||||| ||||||||||||||||     |||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||    
T  15431123 atttgaaataatggaggttgaatgaaaaaaa---tgaaagcgaatgacatccaataactaaaatttaagataaaaaattaaacaaatgaca 15431210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 15522427 - 15522514
Alignment:
Q  33 atttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||| ||||||| ||||||||||||||||     |||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||    
T  15522427 atttgaaataatggaggttgaatgaaaaaaa---tgaaagcgaatgacatccaataactaaaatttaagataaaaaattaaacaaatgaca 15522514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 42797242 - 42797340
Alignment:
Q  236 tcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 334  Q
    ||||||||||||||||| |||| ||||||| ||||  ||||| |||||  |||||||||  || |||| |||||| |||||||| ||||||||||||||    
T  42797242 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatatactattgcattcaatgtgttattttaact 42797340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 30255028 - 30254923
Alignment:
Q  18 accaaatgtgaaggaatttaaaataattgaggttgaatgaaaaatt-gcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaaca 116  Q
    |||||| |||||||||||| ||||||  |||||||||| ||||||| |||||||||||||| |||| | |||| |  ||| ||||||| |||||||||||    
T  30255028 accaaaagtgaaggaatttgaaataa--gaggttgaataaaaaatttgcttgaaagcgaataacattcaaaaattggaatctaagataaaaaattaaaca 30254931  T
Q  117 catgacac 124  Q
     |||||||    
T  30254930 aatgacac 30254923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 13756666 - 13756568
Alignment:
Q  236 tcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 334  Q
    ||||||||||||||||| |||| ||||||| ||||  ||||| || ||  ||| |||||  || ||||||||||| |||||||| ||||||||||||||    
T  13756666 tcacaacttcacccaaaatcttaagacattagatacatgagtcatttcacttaaatgtttctcaacatctactattgcattcaatgtgttattttaact 13756568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 15277608 - 15277716
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||  |||| |  ||  |||||||||||| || ||||||| |||||| ||| ||||| ||||||||| | |||||| ||    
T  15277608 caaattatcataatgttgggacttctgtgagattctaaattgagttgtatgatcacattagcctaagaacaatcacacgagtgagattaatatcacatct 15277707  T
Q  244 tcacccaaa 252  Q
    ||| |||||    
T  15277708 tcatccaaa 15277716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 15457977 - 15458085
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||  |||| |  ||  |||||||||||| || ||||||| |||||| ||| ||||| ||||||||| | |||||| ||    
T  15457977 caaattatcataatgttgggacttctgtgagattctaaattgagttgtatgatcacattagcctaagaacaatcacacgagtgagattaatatcacatct 15458076  T
Q  244 tcacccaaa 252  Q
    ||| |||||    
T  15458077 tcatccaaa 15458085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 43217437 - 43217545
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||  |||| |  ||  |||||||||||| || | ||||| |||||||||| ||||| ||||||||| | |||||| ||    
T  43217437 caaattatcataatgttgggacttctgtgagattctaaattgagttgtatgatcatattagcctaagagcaatcacacgagtgagattaatatcacatct 43217536  T
Q  244 tcacccaaa 252  Q
    ||| |||||    
T  43217537 tcatccaaa 43217545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 20874866 - 20874772
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatga-aaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaa 109  Q
    |||| |||||||||||||||| ||||||| ||  || ||| | ||||| |||||||||||||||| || | ||||||||||||||| ||| ||||    
T  20874866 agactaaatgtgaaggaatttgaaataatggacattcaataagaaaatagcttgaaagcgaatgatattcaaaaactaaaatttaaaataaaaaa 20874772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 758265 - 758194
Alignment:
Q  135 ctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggc 206  Q
    ||||||||| |||||||||||||||||  |||| ||||| | | |  |||| ||||||||||||||||||||    
T  758265 ctaacaaaataaatcatcataatgttgaaacttccgtgagagcgtacattgggttgtatcattacattaggc 758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 12157562 - 12157472
Alignment:
Q  20 caaatgtgaaggaatttaaaataattgaggttgaat-gaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaa 109  Q
    |||| |||||| ||||||||||||| |||||| |||  |||||| || ||||| |||||||| ||| | ||||||||||||| ||| ||||    
T  12157562 caaaggtgaagtaatttaaaataatggaggttaaataaaaaaatagcatgaaaacgaatgacctccaataactaaaatttaatataaaaaa 12157472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 12158514 - 12158436
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaa 94  Q
    ||||||||  ||||||||||||||||||| || ||||||| |||||| || | |||| ||| ||||||  |||||||||    
T  12158514 agaccaaaattgaaggaatttaaaataatagaagttgaataaaaaatagcattaaagagaaagacatcaaaaaactaaa 12158436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 19261671 - 19261717
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaat 62  Q
    ||||||||  ||||||||||||||||||| |||||||||| ||||||    
T  19261671 agaccaaaattgaaggaatttaaaataatggaggttgaataaaaaat 19261717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 38290824 - 38290766
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagat-acaaaattaaacacatgacac 124  Q
    |||||||||||||||||  ||||||||||||||| || | ||||||||||| |||||||    
T  38290824 tgaaagcgaatgacatctgaaaactaaaatttaatataaaaaaattaaacaaatgacac 38290766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 45245619 - 45245525
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaa-aattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaa 109  Q
    |||||||| || ||||||||||||||||  |||||||||| ||| ||| || ||||| |||||||  ||| | |||||||||| || ||||||||    
T  45245619 agaccaaaagtaaaggaatttaaaataagggaggttgaataaaataatagcatgaaaacgaatgatttccaataactaaaattaaaaatacaaaa 45245525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 361354 - 361309
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaa 61  Q
    |||||||| |||||||||||| |||||| ||||||||||| |||||    
T  361354 agaccaaaagtgaaggaatttgaaataagtgaggttgaataaaaaa 361309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 16248324 - 16248393
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaatt-gcttgaaagcgaatgacatcccaaaactaaaatttaa 100  Q
    ||||||||||||| || ||||||| ||||| | || | ||| |||||||||||| |||||||||||||||    
T  16248324 aatttaaaataatagatgttgaataaaaaaatagcatcaaaacgaatgacatccaaaaactaaaatttaa 16248393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 16311537 - 16311606
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaatt-gcttgaaagcgaatgacatcccaaaactaaaatttaa 100  Q
    ||||||||||||| || ||||||| ||||| | || | ||| |||||||||||| |||||||||||||||    
T  16311537 aatttaaaataatagatgttgaataaaaaaatagcatcaaaacgaatgacatccaaaaactaaaatttaa 16311606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 34802582 - 34802513
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaatt-gcttgaaagcgaatgacatcccaaaactaaaatttaa 100  Q
    ||||||||||||| || ||||||| ||||| | || | ||| |||||||||||| |||||||||||||||    
T  34802582 aatttaaaataatagacgttgaataaaaaaatagcatcaaaacgaatgacatccaaaaactaaaatttaa 34802513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 14375317 - 14375233
Alignment:
Q  18 accaaatgtgaaggaatttaaaataattgaggttgaatgaaaaa-ttgcttgaaagcgaatgacatcccaaaactaaaatttaag 101  Q
    |||||| | ||||||||||| | |||| |||||||||| ||||| |||| ||||||| || ||||||  ||| ||||||||||||    
T  14375317 accaaaagcgaaggaatttatagtaatagaggttgaataaaaaaattgcatgaaagcaaacgacatctaaaagctaaaatttaag 14375233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 334
Target Start/End: Complemental strand, 13229022 - 13228724
Alignment:
Q  33 atttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacacnnnnnnnn 132  Q
    |||||| |||||  ||||||| | |||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| |||||||            
T  13229022 atttaatataataaaggttgattaaaaaattgcttgaaaatgaatgacatcccaaaactaaaatataagatacaaaattaaacaaatgacacaaaaaaaa 13228923  T
Q  133 nnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattg 232  Q
      ||||||||| ||||||||||| ||||| |||||  |||  ||||| ||||   ||||||||| |||||||| ||| ||||| ||||||||| ||||||    
T  13228922 --ctaacaaaagaaatcatcatagtgttgagacttgtgtgggaacctttattcgattgtatcataacattaggttaaaagcaaacacacaagtaagattg 13228825  T
Q  233 acatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaa 332  Q
    |||||||||||||||||||| | || ||| ||| ||||| ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||||||||    
T  13228824 acatcacaacttcacccaaaattttaaga-attagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaa 13228726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 32 - 240
Target Start/End: Complemental strand, 39975172 - 39974966
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaa-ttgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacacnnnnnn 130  Q
    ||||||||||||| |||||||||| ||||| |||| || |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||          
T  39975172 aatttaaaataatagaggttgaataaaaaaattgcatggaagcgaatgacatctcaaaactaaaatttaagatacaaaatttaacaaatgacaccacaac 39975073  T
Q  131 nnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagat 230  Q
        ||||||||||||||||| ||||||||| |||||| |||  |||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||    
T  39975072 a---ctaacaaaacaaatcataataatgttgagacttttgtgggaacctgtattggattgtatcataacattagactaaaagcaagcacacaagtgagat 39974976  T
Q  231 tgacatcaca 240  Q
    ||||||||||    
T  39974975 tgacatcaca 39974966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 240
Target Start/End: Complemental strand, 282254 - 282042
Alignment:
Q  26 tgaaggaatttaaaataattgaggttgaatgaaaaa-ttgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    ||||| ||||||||||||| ||| |||||| ||||| |||| || || |||||||||||||||||||||||||||||||||| |||| |||| |||||||    
T  282254 tgaagaaatttaaaataatagagattgaataaaaaaattgcatggaaacgaatgacatcccaaaactaaaatttaagatacacaatttaacaaatgacac 282155  T
Q  125 nnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaag 224  Q
              ||||||||||||||||| |||||||||||||||| |||  |||||||||||  ||||||||| ||||||| |||| |||||||||||||     
T  282154 caaacaa---ctaacaaaacaaatcataataatgttgggacttttgtgggaacctgtattggattgtatcataacattagactaaaagcaagcacacaaa 282058  T
Q  225 tgagattgacatcaca 240  Q
    ||||||||||||||||    
T  282057 tgagattgacatcaca 282042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 49952805 - 49952985
Alignment:
Q  48 ggttgaatgaaaaa-ttgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacacnnnnnnnnnnctaacaaaacaa 146  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||||||||| || ||||||| |||| |||||||          |||| |||||||    
T  49952805 ggttgaatgaaaaaattgcatggaagcgaatgacatcccaaaactaaaatttaaaattcaaaatttaacaaatgacacccaaaaa---ctaagaaaacaa 49952901  T
Q  147 atcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacat 236  Q
    || |     ||||||||||||||||| || |||||||||  ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  49952902 ataa-----atgttgggactttcgtggaa-cctgtattggattgtatcataacattagactaagagcaagcacacaagtgagattgacat 49952985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 42757373 - 42757567
Alignment:
Q  69 aaagcgaatgacatcccaaaactaaaatttaagatacaa-aattaaacacatgacacnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactt 167  Q
    |||||||||||||||| ||| ||||||||||||||| || ||||||||| |||||||          ||||||||||||||||| ||||||||| |||||    
T  42757373 aaagcgaatgacatcctaaagctaaaatttaagataaaagaattaaacaaatgacactaaaaaa---ctaacaaaacaaatcattataatgttgtgactt 42757469  T
Q  168 tcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaacttcacccaaattcttgagacatt 265  Q
       || || |||  ||||| ||||||||| | ||||| | || |||||  ||||||||||||| ||||||||   |||||||||| || | |||||||    
T  42757470 atatggaagcctacattgatttgtatcatcatattagtcaaatagcaacaacacaagtgagatcgacatcaccttttcacccaaagtcctaagacatt 42757567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 22680247 - 22680347
Alignment:
Q  26 tgaaggaatttaaaataattgaggttgaat--gaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||||||||||||||||||| |||   |||||| || ||||| ||||||| |||| | ||||||||||||| ||| |||| ||| || ||||||    
T  22680247 tgaaggaatttaaaataattgaggttaaataaaaaaaatagcatgaaaacgaatgaaatccaataactaaaatttaatataaaaaaataatcaaatgaca 22680346  T
Q  124 c 124  Q
    |    
T  22680347 c 22680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 248
Target Start/End: Original strand, 42729223 - 42729443
Alignment:
Q  25 gtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaa-tttaagatacaaaatt-aaacacatgac 122  Q
    |||||| ||||||||||||| |||||||||| ||||| ||| |||||||  ||||||||  ||| |||||| |||| |||| |||||| ||||| |||||    
T  42729223 gtgaagaaatttaaaataatagaggttgaattaaaaaatgcatgaaagcagatgacatctaaaatctaaaattttatgataaaaaattaaaacaaatgac 42729322  T
Q  123 acnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacaca 222  Q
    ||           || ||||||||||||||||||| ||| |||||  |||| |||||  |||| || ||||||| | |||||  ||   |||  ||||||    
T  42729323 acaaaaat-----tagcaaaacaaatcatcataatattgagacttatgtgagaacctacattgggtcgtatcatcatattagtgtatttgcacccacaca 42729417  T
Q  223 agtgagattgacatcacaacttcacc 248  Q
    ||||||||||||| |||| |||||||    
T  42729418 agtgagattgacaacacatcttcacc 42729443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 24183291 - 24183399
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| |||||||||||| || ||  |||| || ||  |||||||||||| || ||||||| |||||||||| ||||| | ||||||| | |||||| ||    
T  24183291 caaattatcataatgttgagaattatgtgagaatctaaattgagttgtatgatcacattagcctaagagcaaccacacgaatgagattaatatcacatct 24183390  T
Q  244 tcacccaaa 252  Q
    ||| |||||    
T  24183391 tcatccaaa 24183399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 27741210 - 27741255
Alignment:
Q  69 aaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaa 114  Q
    |||||||||||||| | ||| ||||||||||||||| |||||||||    
T  27741210 aaagcgaatgacatgcaaaacctaaaatttaagataaaaaattaaa 27741255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 2041222 - 2041174
Alignment:
Q  204 ggctaagagcaagcacacaagtgagattgacatcacaacttcacccaaa 252  Q
    |||||||||||| |||||||||||| | |||| |||| |||||||||||    
T  2041222 ggctaagagcaaccacacaagtgagttggacaccacatcttcacccaaa 2041174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 13909965 - 13909885
Alignment:
Q  184 tgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaacttcacccaaattcttgagacat 264  Q
    ||||||| ||||||||||| | ||||||| || | ||||| ||||||||||| |||| |||||  |||| |||| ||||||    
T  13909965 tgagttggatcattacatttgtctaagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacat 13909885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 50158332 - 50158280
Alignment:
Q  188 ttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcaca 240  Q
    |||||| || |||||||||||| ||||| |||||||| |||||||| ||||||    
T  50158332 ttgtataatcacattaggctaatagcaaccacacaagcgagattgatatcaca 50158280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 32992 - 33299
Alignment:
Q  25 gtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||| ||||||||||||| |||||| ||| ||||||||||| | | | |||||||||| |||||||||||||||||||||||||||| || |  | |     
T  32992 gtgaagaaatttaaaataatagaggttaaataaaaaattgcttaacaacaaatgacatccaaaaactaaaatttaagatacaaaattaa-caaaacaaa- 33089  T
Q  125 nnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagc--acaca 222  Q
              |||||||| |||||||||||||| ||| ||||||||||  || || ||||| |||||||||  |||||||||| | |||||||  |||||    
T  33090 taaaaaaaaactaacaaaccaaatcatcataattttgagactttcgtgggaaactttattgggttgtatcacaacattaggctgaaagcaagcgcacaca 33189  T
Q  223 agtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgt 322  Q
    ||| |||||||||||||||||||||||||| |||| ||||||| ||||  ||||| |||||  ||||||||||||| ||||||||||| |||||||| ||    
T  33190 agtaagattgacatcacaacttcacccaaaatcttaagacattagata--tgagtcatctcacttatatgttgttcaacatctactattgcattcaatgt 33287  T
Q  323 gttattttaact 334  Q
    ||||||||||||    
T  33288 gttattttaact 33299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 43386850 - 43387154
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaac 115  Q
    |||||| | ||||| |||||||| | ||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  43386850 agaccagaagtgaaagaatttaatacaatagtggttgaatgaaaaattgcttgaaagtgaatgacatcccaaaaccaaaatttaagataaaaaattaaac 43386949  T
Q  116 acatgacacnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaa 215  Q
    | |||||||          ||||||||| ||||||||||||||||| || |||||||  |||   ||||       ||||| |||||||| ||| |||||    
T  43386950 aaatgacaccaaaag----ctaacaaaaaaaatcatcataatgttgagaatttcgtgggaac---tatt-------atcataacattaggttaaaagcaa 43387035  T
Q  216 gcacacaagtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcat 315  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||| |||||  |||| || ||  |||||||||  || ||||||||||| ||||    
T  43387036 gcacacaagtaagattgacatcacaacttcacccaaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctactattgcat 43387135  T
Q  316 tcaacgtgttattttaact 334  Q
    |||| |||| |||||||||    
T  43387136 tcaatgtgtaattttaact 43387154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 31090102 - 31090199
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacacnnnnnnnnnnctaacaaaacaaatcatcataatgttgggact 166  Q
    ||||||||||||||||   ||||||||||||||||||| ||||||||||| |||||||          |||||||||||||||||||||||||||| |||    
T  31090102 tgaaagcgaatgacataaaaaaactaaaatttaagataaaaaattaaacaaatgacac---ccctaaactaacaaaacaaatcatcataatgttggaact 31090198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 20306534 - 20306590
Alignment:
Q  68 gaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  20306534 gaaagcgaatgacattcaaaaactaaaatttaagataaaaaattaaacaaatgacac 20306590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 1992707 - 1992651
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  1992707 tgaaagcgaatgacattcaaaaactaaaatttaagata-aaaattaaacaaatgacac 1992651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 30001543 - 30001599
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  30001543 tgaaagcgaatgacattcaaaaactaaaatttaagata-aaaattaaacaaatgacac 30001599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 40946804 - 40946748
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  40946804 tgaaagcgaatgacattcaaaaactaaaatttaagata-aaaattaaacaaatgacac 40946748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 8313295 - 8313353
Alignment:
Q  182 attgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcaca 240  Q
    |||||||||||| || ||||||||||| |||||| ||||| ||||||||| ||||||||    
T  8313295 attgagttgtatgatcacattaggctaggagcaatcacacgagtgagattaacatcaca 8313353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 16852182 - 16852074
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| |||||||||||| |||||  |||| |  ||  |||||||||||| || ||||||| ||||||| || ||||| ||||||||| | |||||| ||    
T  16852182 caaattatcataatgttgagacttatgtgagagtctaaattgagttgtatgatcacattagcctaagagtaatcacacgagtgagattaatatcacatct 16852083  T
Q  244 tcacccaaa 252  Q
    ||| |||||    
T  16852082 tcatccaaa 16852074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 21467469 - 21467514
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaa 61  Q
    |||||||| |||||||||||| |||||| ||||||||||| |||||    
T  21467469 agaccaaaagtgaaggaatttgaaataagtgaggttgaataaaaaa 21467514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 29998091 - 29998139
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||||    
T  29998091 aatgacatccaataactaaattttaagataaaaaattaaacaaatgaca 29998139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 49881342 - 49881270
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaatt-gcttgaaagcgaatgacatcccaaaactaaaatttaagat 103  Q
    ||||| ||||||||||||||||||||||||||  |  ||||| ||||||||| | ||||| ||| ||||||||    
T  49881342 aatttgaaataattgaggttgaatgaaaaattcacaagaaagagaatgacattcaaaaacaaaattttaagat 49881270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 36096438 - 36096235
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaa-ttgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacacnnnnnn 130  Q
    ||||||||||||| |||||||||| ||||| |||| || |||||||||||||| ||||||||||||||||||||||||||| || | |||||||          
T  36096438 aatttaaaataatagaggttgaataaaaaaattgcatggaagcgaatgacatctcaaaactaaaatttaagatacaaaatttaagaaatgacaccaaaaa 36096339  T
Q  131 nnnnctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagat 230  Q
        ||||||||||||||||| |||||||||||||||| |||  |||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||    
T  36096338 a---ctaacaaaacaaatcataataatgttgggacttttgtgggaacctgtattggattgtatcataacattagactaaaagcaagcacacaagtgagat 36096242  T
Q  231 tgacatc 237  Q
    |||||||    
T  36096241 tgacatc 36096235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 50331915 - 50332013
Alignment:
Q  236 tcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 334  Q
    ||||||||||||||||| |||| ||||||| ||||  ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||||||||||    
T  50331915 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaact 50332013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 9261684 - 9261577
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||  |||| |   |  |||||||||||| |||||||||| |||||||||| ||||| ||||||||| | |||||| ||    
T  9261684 caaattatcataatgttgggacttctgtgagagtttaaattgagttgtatgattacattagcctaagagcaatcacacgagtgagattaatatcacatct 9261585  T
Q  244 tcacccaa 251  Q
    ||| ||||    
T  9261584 tcatccaa 9261577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 20934797 - 20934854
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    ||||||||||| |||| | ||||||||||||||||||| ||||||||||| |||||||    
T  20934797 tgaaagcgaataacattcaaaaactaaaatttaagataaaaaattaaacaaatgacac 20934854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 6436135 - 6436033
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||| |||| |  ||  |||||| ||||| || ||||||| |||||| ||| ||||| ||||||||| | |||||| ||    
T  6436135 caaattatcataatgttgggacttttgtgagattctaaattgagatgtatgatcacattagcctaagaacaatcacacgagtgagattaatatcacatct 6436036  T
Q  244 tca 246  Q
    |||    
T  6436035 tca 6436033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 2251281 - 2251236
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaa 61  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||    
T  2251281 agaccaaaagtgaaggaatttgaaataattgaggttgaataaaaaa 2251236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 14233137 - 14233044
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaa 109  Q
    |||||||| |||||||||||| ||||||  |||||||||| |||||| || |||||  |||  | |||| | ||||||||||||| ||||||||    
T  14233137 agaccaaaagtgaaggaatttgaaataagcgaggttgaataaaaaatagcatgaaaatgaacaatatccaataactaaaatttaacatacaaaa 14233044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 32976271 - 32976328
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    ||||||||||| |||| | ||||||||||||||||||| || |||||||| |||||||    
T  32976271 tgaaagcgaattacattcaaaaactaaaatttaagataaaatattaaacaaatgacac 32976328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 52116 - 52070
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaat 62  Q
    ||||||||  ||||||||||||||||||| |||||||||| ||||||    
T  52116 agaccaaaattgaaggaatttaaaataatggaggttgaataaaaaat 52070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 38352582 - 38352616
Alignment:
Q  135 ctaacaaaacaaatcatcataatgttgggactttc 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  38352582 ctaacaaaacaaatcatcataatattgggactttc 38352616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 432199 - 432082
Alignment:
Q  135 ctaacaaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgac 234  Q
    ||||||||||||| ||| |||||||||  ||||   ||  |||||  ||||  ||||||||| | ||||| | ||||||||  ||||||||||||| |||    
T  432199 ctaacaaaacaaaacattataatgttgcaacttctatgggaacctacattggattgtatcatcatattagtcaaagagcaacaacacaagtgagatcgac 432100  T
Q  235 atcacaacttcacccaaa 252  Q
    |||||  |||||||||||    
T  432099 atcacttcttcacccaaa 432082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 21320549 - 21320512
Alignment:
Q  201 ttaggctaagagcaagcacacaagtgagattgacatca 238  Q
    |||||||||||| || ||||||||||||||||||||||    
T  21320549 ttaggctaagagtaatcacacaagtgagattgacatca 21320512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 42400184 - 42400240
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    ||||||| |||||| | | ||||||||||||||||||| ||||||||||| |||||||    
T  42400184 tgaaagcaaatgacgttcaaaaactaaaatttaagata-aaaattaaacaaatgacac 42400240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 42396730 - 42396778
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||||    
T  42396730 aatgacatccaataactaaattttaagataaaaaattaaacaaatgaca 42396778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 26895233 - 26894969
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaac 115  Q
    ||||||||  ||||||||| ||||||||| |||||||||| |||| || ||||| | ||||||||||| |||||||||| |||||||||| |||||||||    
T  26895233 agaccaaaactgaaggaatataaaataatagaggttgaataaaaagttacttgataacgaatgacatctcaaaactaaattttaagataccaaattaaac 26895134  T
Q  116 acatgacacnnnnnnnnnnctaac-aaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagca 214  Q
    | ||| |||          ||||| |||| |||| |||| |||||| |||||||||||  |||||| |||| |||||||||| | ||||||| |||||||    
T  26895133 aaatggcac--caaaaaaactaacaaaaataaattatcaaaatgtttggactttcgtgggaacctgcattgggttgtatcataaaattaggcaaagagca 26895036  T
Q  215 a----gcacacaagtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagt 277  Q
    |    ||| |||| ||| | ||| |||||||||||||||||| ||||  |||||| |||||||||||    
T  26895035 aacatgcatacaaatgataatgatatcacaacttcacccaaaatcttatgacattagatatttgagt 26894969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 298
Target Start/End: Original strand, 29214143 - 29214302
Alignment:
Q  139 caaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatca 238  Q
    ||||| |||||| |||||||||| ||||||||||  |||||  |||||||||||||||||||||| ||||||||||| |||| ||||||||||   ||||    
T  29214143 caaaataaatcaccataatgttgagactttcgtgtgaacctacattgagttgtatcattacattacgctaagagcaaccacataagtgagattattatca 29214242  T
Q  239 caacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttc 298  Q
    || ||||| ||||| |||| ||||| | | ||| ||||| |||||  || ||||||||||    
T  29214243 catcttcatccaaagtcttaagacaataggtatatgagtcatctcacttgtatgttgttc 29214302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 1599808 - 1599714
Alignment:
Q  240 aacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 334  Q
    ||||||||||||| |||| ||||||| ||||  ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||||||||||    
T  1599808 aacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaact 1599714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 7428286 - 7428342
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  7428286 tgaaagcgaatgacattcaaaaactaaaatttaagata-aaaattaaacaaatgacac 7428342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 16278881 - 16278937
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  16278881 tgaaagcgaatgacattcaaaaactaaaatttaagata-aaaattaaacaaatgacac 16278937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 28315943 - 28315887
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  28315943 tgaaagcgaatgacattcaaaaactaaaatttaagata-aaaattaaacaaatgacac 28315887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 15634017 - 15634118
Alignment:
Q  139 caaaacaaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatca 238  Q
    |||||||||||||||| ||||| |||||| ||||  ||||| | |||  |||||| || |||| ||| |||||||||  |||| ||||| ||||||||||    
T  15634017 caaaacaaatcatcatgatgtttggacttccgtgggaacctatgttggattgtattatcacataaggttaagagcaataacactagtgatattgacatca 15634116  T
Q  239 ca 240  Q
    ||    
T  15634117 ca 15634118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 23408351 - 23408420
Alignment:
Q  32 aatttaaaataattgaggttgaatgaaaaatt-gcttgaaagcgaatgacatcccaaaactaaaatttaa 100  Q
    |||||||||||||||| ||||||| ||||| | || | ||| |||||||||||| |||||||||||||||    
T  23408351 aatttaaaataattgatgttgaataaaaaaatagcatcaaaacgaatgacatccaaaaactaaaatttaa 23408420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 257
Target Start/End: Complemental strand, 24175229 - 24175116
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||||||||||||||||||||||  |||  |||||  |||| |||||||||| | |||||  ||  ||||| || ||||||  ||||||||||||| ||    
T  24175229 caaatcatcataatgttgggacttatgtgggaacctacattgggttgtatcatcatattagtgtattagcaaccaaacaagtatgattgacatcacatct 24175130  T
Q  244 tcacccaaattctt 257  Q
    ||||| ||| ||||    
T  24175129 tcaccaaaagtctt 24175116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 3531777 - 3531882
Alignment:
Q  18 accaaatgtgaaggaatttaaaataattgaggttgaatgaaaaa--ttgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaac 115  Q
    |||||| |||||||||||| ||||||| | ||||||||||||||  |||| |||||   | | |||||| ||||||||| ||||||||| ||||||||||    
T  3531777 accaaaagtgaaggaatttgaaataatag-ggttgaatgaaaaaatttgcatgaaaaacatt-acatccaaaaactaaattttaagataaaaaattaaac 3531874  T
Q  116 acatgaca 123  Q
    | ||||||    
T  3531875 aaatgaca 3531882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 16707680 - 16707635
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaa 61  Q
    |||||||| ||||| |||||| ||||||| ||||||||||||||||    
T  16707680 agaccaaaagtgaaagaatttgaaataatagaggttgaatgaaaaa 16707635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 10191461 - 10191370
Alignment:
Q  20 caaatgtgaaggaatttaaaataattgaggttgaatgaaaaat--tgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaa 109  Q
    |||| ||||| |||||| |||||||  || |||||| ||||||  ||| |||||| ||||||||||| |  |||||||||||||||| ||||    
T  10191461 caaaagtgaatgaatttgaaataatatagattgaataaaaaataatgcatgaaagtgaatgacatccaattactaaaatttaagataaaaaa 10191370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 16275430 - 16275478
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||||    
T  16275430 aatgacatccaataactaaattttaagataaaaaattaaacaaatgaca 16275478  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 22826570 - 22826618
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||||    
T  22826570 aatgacatccaataactaaattttaagataaaaaattaaacaaatgaca 22826618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 28319364 - 28319316
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||||    
T  28319364 aatgacatccaataactaaattttaagataaaaaattaaacaaatgaca 28319316  T

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Target: scaffold1315 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 265
Target Start/End: Complemental strand, 806 - 612
Alignment:
Q  69 aaagcgaatgacatcccaaaactaaaatttaagatacaa-aattaaacacatgacacnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactt 167  Q
    |||||||||||||||| ||||||||||||||||||| || ||||||||| ||||||           ||||||||||||||||| ||||||||| |||||    
T  806 aaagcgaatgacatcctaaaactaaaatttaagataaaagaattaaacaaatgaca---tccaaaaactaacaaaacaaatcattataatgttgcgactt 710  T
Q  168 tcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaacttcacccaaattcttgagacatt 265  Q
       ||||| |||  ||||||||||||||| | ||||| | || |||||   |||||||||||| ||||||||   |||||||||| || | |||||||    
T  709 atatgaaagcctacattgagttgtatcatcatattagtcaaatagcaacagcacaagtgagatcgacatcactttttcacccaaagtcctaagacatt 612  T

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Target: scaffold1293 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 1265 - 1459
Alignment:
Q  69 aaagcgaatgacatcccaaaactaaaatttaagatacaa-aattaaacacatgacacnnnnnnnnnnctaacaaaacaaatcatcataatgttgggactt 167  Q
    |||||||||||||||| ||||||||||||||||||| || ||||||||| ||||||           ||||||||||||||||| ||||||||| |||||    
T  1265 aaagcgaatgacatcctaaaactaaaatttaagataaaagaattaaacaaatgaca---tccaaaaactaacaaaacaaatcattataatgttgcgactt 1361  T
Q  168 tcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaacttcacccaaattcttgagacatt 265  Q
       ||||| |||  ||||||||||||||| | ||||| | || |||||   |||||||||||| ||||||||   |||||||||| || | |||||||    
T  1362 atatgaaagcctacattgagttgtatcatcatattagtcaaatagcaacagcacaagtgagatcgacatcactttttcacccaaagtcctaagacatt 1459  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 323
Target Start/End: Original strand, 47073 - 47203
Alignment:
Q  193 tcattacattaggctaagagcaagcacacaagtgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatg 292  Q
    |||| ||||||| |||||||||| |||||| | | |||||||| |||| ||||||||||| |||| ||||||  | ||| || || |||||  |||||||    
T  47073 tcatcacattagcctaagagcaaccacacatgcgcgattgacaccacatcttcacccaaagtcttaagacatgaggtatgtgtgtcatctcacttatatg 47172  T
Q  293 ttgttctacatctactatcgcattcaacgtg 323  Q
    |||||| |||||||||||  ||| |||||||    
T  47173 ttgttcaacatctactattccatacaacgtg 47203  T

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Target: scaffold0191 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 5336 - 5272
Alignment:
Q  182 attgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaacttca 246  Q
    |||||||||||| || |||||||||||||||||| ||||| ||||||||| |||||||| |||||    
T  5336 attgagttgtatgatcacattaggctaagagcaatcacacgagtgagattaacatcacaccttca 5272  T

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Target: scaffold1750 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 85 - 141
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||    
T  85 tgaaagcgaatgacattcaaaaactaaaatttaagata-aaaattaaacaaatgacac 141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 43989969 - 43989912
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgacac 124  Q
    |||||||||||||||| | ||||||||||||||||||  ||||||||||| |||||||    
T  43989969 tgaaagcgaatgacattcaaaaactaaaatttaagatgaaaaattaaacaaatgacac 43989912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 3633884 - 3633940
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    ||||| |||||||||||||| ||||||||||||||||| |||| |||||| ||||||    
T  3633884 tgaaaacgaatgacatcccataactaaaatttaagataaaaaaataaacaaatgaca 3633940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 6188086 - 6187978
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||   ||| |  ||  |||||||||||| || ||||||| |||||||||| ||||| ||||||||| | |||||| ||    
T  6188086 caaattatcataatgttgggacttctatgagattctacattgagttgtataatcacattagcctaagagcaatcacacgagtgagattaatatcacatct 6187987  T
Q  244 tcacccaaa 252  Q
    ||| |||||    
T  6187986 tcatccaaa 6187978  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 6194602 - 6194494
Alignment:
Q  144 caaatcatcataatgttgggactttcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattgacatcacaact 243  Q
    ||||| ||||||||||||||||||   ||| |  ||  |||||||||||| || ||||||| |||||||||| ||||| ||||||||| | |||||| ||    
T  6194602 caaattatcataatgttgggacttctatgagattctacattgagttgtataatcacattagcctaagagcaatcacacgagtgagattaatatcacatct 6194503  T
Q  244 tcacccaaa 252  Q
    ||| |||||    
T  6194502 tcatccaaa 6194494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 5785718 - 5785772
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatga 121  Q
    |||||||||||||||||| | ||||||| ||||||||| ||||||||||| ||||    
T  5785718 tgaaagcgaatgacatccaataactaaattttaagataaaaaattaaacaaatga 5785772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 42078476 - 42078565
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaat-gaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagata 104  Q
    |||||||||||||||||||||||||||| |  ||||| ||  ||||||| | | |||| ||||| ||||| | |||||||||||||||||    
T  42078476 agaccaaatgtgaaggaatttaaaataacttgggttgtataaaaaaattacatcaaagtgaatgtcatccaagaactaaaatttaagata 42078565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 26374474 - 26374596
Alignment:
Q  135 ctaacaaaacaaatcatcataatgttgggactt-tcgtgaaaacctgtattgagttgtatcattacattaggctaagagcaagcacacaagtgagattga 233  Q
    ||||||||||||||||||||| ||||||||||| | |||  | |||  |||| ||||||||| |  |||||||||| |  || ||||||| ||| |||||    
T  26374474 ctaacaaaacaaatcatcatattgttgggacttctagtg-tagcctacattgggttgtatcactgtattaggctaaaataaaccacacaaatgatattga 26374572  T
Q  234 catcacaacttcacccaaattctt 257  Q
    || ||||| ||| |||||||||||    
T  26374573 caccacaatttctcccaaattctt 26374596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 6678153 - 6678201
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||||||||||||| |||| |||||| ||||||    
T  6678153 aatgacatccaataactaaaatttaagataaaaaactaaacaaatgaca 6678201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 18347969 - 18347929
Alignment:
Q  69 aaagcgaatgacatcccaaaactaaaatttaagatacaaaa 109  Q
    |||||||||||||||  ||||||||||||||||||| ||||    
T  18347969 aaagcgaatgacatctaaaaactaaaatttaagataaaaaa 18347929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 12201 - 12145
Alignment:
Q  67 tgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    ||||| |||||||||||||| ||||||||||||||||| |||| |||||| ||||||    
T  12201 tgaaaacgaatgacatcccataactaaaatttaagataaaaaaataaacaaatgaca 12145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 17669 - 17582
Alignment:
Q  16 agaccaaatgtgaaggaatttaaaataattgaggttgaatgaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagat 103  Q
    |||||||| |||||| ||||||||||||| || ||||||| ||||||    | |||||||||||||||| |||| ||||||| |||||    
T  17669 agaccaaaagtgaagtaatttaaaataatagatgttgaataaaaaatataatcaaagcgaatgacatccaaaaattaaaattgaagat 17582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 928 - 822
Alignment:
Q  18 accaaatgtgaaggaatttaaaataattgaggttgaat-gaaaaattgcttgaaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaaca 116  Q
    ||||||||  ||||||||||||||||| ||| |||||| ||||||| || ||||||  |||||||| | ||| |||||  |||||| |  ||||||||||    
T  928 accaaatgaaaaggaatttaaaataatagagcttgaatagaaaaatagcatgaaagataatgacatacaaaatctaaatgttaagaaaacaaattaaaca 829  T
Q  117 catgaca 123  Q
     ||||||    
T  828 aatgaca 822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 2518 - 2473
Alignment:
Q  69 aaagcgaatgacatcccaaaactaaaatttaagatacaaaattaaa 114  Q
    |||| ||||||||||| ||| ||||||||||||||| |||||||||    
T  2518 aaagtgaatgacatccaaaacctaaaatttaagataaaaaattaaa 2473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 8586 - 8626
Alignment:
Q  207 taagagcaagcacacaagtgagattgacatcacaacttcac 247  Q
    ||||||||| ||||||||||||||||||| |||| ||||||    
T  8586 taagagcaatcacacaagtgagattgacaccacatcttcac 8626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 8741 - 8781
Alignment:
Q  207 taagagcaagcacacaagtgagattgacatcacaacttcac 247  Q
    ||||||||| ||||||||| |||||||||||||| ||||||    
T  8741 taagagcaatcacacaagtaagattgacatcacatcttcac 8781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 110470 - 110422
Alignment:
Q  75 aatgacatcccaaaactaaaatttaagatacaaaattaaacacatgaca 123  Q
    |||||||||| | ||||||| ||||||||| ||||||||||| ||||||    
T  110470 aatgacatccaataactaaattttaagataaaaaattaaacaaatgaca 110422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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