View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_48 (Length: 334)
Name: NF19379_high_48
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 40886881 - 40886563
Alignment:
| Q |
1 |
catggtattttcttggaactgcaaaattaaatttattaagtagaacgagagaagtataatta---gtacctgatcaaccaaactgcaaacaatacctcct |
97 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40886881 |
catggtattttcttcgaactgcaaaattaaatttattaagtagaatgagagaagtataattattagtacctgatcaaccaaactgcaaacaatacctcct |
40886782 |
T |
|
| Q |
98 |
aaaaaagaagataaagaagagggttcaaaaatcattcatattatgaaagaagtataattagtacttgatcaacaaaatactaaattgatcaaaaattcaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40886781 |
aaaaaagaagataaagaagagggttcaaaaatcattcatattatgaaagaagtataattagtacttgatcaacaaaatactaaattgatcaaaaactcaa |
40886682 |
T |
|
| Q |
198 |
atccacttattagcattacccaatcaagcccaaagatcatcaaatatatgttttttccattcaaagaaatttctccgccatttcaaatcccaactccaag |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40886681 |
atccacttattagcattacccaatcaagcccaaagatcatcaaatatatgttttttccattcaaagaaatttctccgccatttcaaatcccaactccaag |
40886582 |
T |
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| Q |
298 |
acctctccaccatgttctc |
316 |
Q |
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||||||||||||||||||| |
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| T |
40886581 |
acctctccaccatgttctc |
40886563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 21418549 - 21418476
Alignment:
| Q |
226 |
cccaaagatcatcaaatatatgttttttccattcaaagaaatttctccgccatttcaaatcccaactccaagacc |
300 |
Q |
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|||||||||| ||||||| || ||||| ||||||||| | ||| |||||||| |||||||||||||||||||||| |
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| T |
21418549 |
cccaaagatcttcaaataaat-tttttcccattcaaaaagattcctccgccacttcaaatcccaactccaagacc |
21418476 |
T |
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