View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_53 (Length: 324)
Name: NF19379_high_53
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_53 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 53454556 - 53454866
Alignment:
| Q |
14 |
agactgaaaaaatagaactaacaaatgcataaaatattcttttggcacaggtgggaactaactcagggcctaaattctgcaagaaaggttgaccactagg |
113 |
Q |
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| T |
53454556 |
agactgaaaaaatagaaccaacaaatgcataaaatattcttttggcacaggtggtaactaactcagggcctaaattctgcaagaaaggttgaccactagg |
53454655 |
T |
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| Q |
114 |
ctatggccttgagataacattaatagttatatattcaattggcattaagagagcaaacagcagactatccctcttaattccttctcagataaactatggc |
213 |
Q |
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| T |
53454656 |
ctatggccttgagataacattaataattatagattcaattggcattaagagagcaaagagcagactatccctcttaattccttctcagataaactatggc |
53454755 |
T |
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| Q |
214 |
cttgagataacattaaaaggtgtgtgctagtacccaacaccttttacatggaccaataaaccattttctttcttcgcaacaattaactatatttaaggct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53454756 |
cttgagataacattaaaaggtgtgtgctagtacccaacaccttttacatggaccaataaaccattttctttcttcgcaacaattaactatatttaaggct |
53454855 |
T |
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| Q |
314 |
attgatgtaat |
324 |
Q |
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| T |
53454856 |
attaatgtaat |
53454866 |
T |
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