View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_high_54 (Length: 324)

Name: NF19379_high_54
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_high_54
NF19379_high_54
[»] chr8 (19 HSPs)
chr8 (30-112)||(28772011-28772093)
chr8 (29-108)||(25987671-25987750)
chr8 (32-108)||(44090994-44091070)
chr8 (33-112)||(2730849-2730928)
chr8 (30-108)||(26027004-26027082)
chr8 (31-108)||(1068714-1068791)
chr8 (31-112)||(33451451-33451531)
chr8 (32-112)||(34435624-34435704)
chr8 (29-108)||(15716860-15716939)
chr8 (30-112)||(33107752-33107834)
chr8 (31-108)||(44061825-44061902)
chr8 (32-108)||(9630231-9630307)
chr8 (32-105)||(37172171-37172244)
chr8 (35-100)||(9629679-9629744)
chr8 (32-112)||(42652697-42652777)
chr8 (45-103)||(4672104-4672162)
chr8 (30-108)||(12241180-12241258)
chr8 (33-98)||(17775312-17775377)
chr8 (45-101)||(45405884-45405940)
[»] chr4 (22 HSPs)
chr4 (32-112)||(50506492-50506572)
chr4 (29-110)||(14443304-14443385)
chr4 (36-112)||(54000802-54000878)
chr4 (29-108)||(19651803-19651882)
chr4 (30-112)||(51577718-51577800)
chr4 (29-108)||(18316045-18316124)
chr4 (30-112)||(39158209-39158291)
chr4 (31-107)||(5386481-5386557)
chr4 (38-112)||(2738161-2738235)
chr4 (30-112)||(51255850-51255932)
chr4 (29-108)||(1816560-1816639)
chr4 (34-112)||(41262234-41262312)
chr4 (31-108)||(22813608-22813685)
chr4 (30-111)||(50050741-50050822)
chr4 (45-108)||(5932664-5932727)
chr4 (29-112)||(38519897-38519980)
chr4 (30-108)||(29227128-29227206)
chr4 (31-108)||(2004075-2004152)
chr4 (31-108)||(10146975-10147052)
chr4 (27-108)||(52204958-52205039)
chr4 (72-108)||(149412-149448)
chr4 (33-109)||(21014104-21014180)
[»] chr1 (15 HSPs)
chr1 (32-108)||(48858931-48859007)
chr1 (32-111)||(5771631-5771710)
chr1 (31-108)||(42468700-42468777)
chr1 (36-112)||(7918953-7919029)
chr1 (30-108)||(47642492-47642570)
chr1 (29-112)||(48983552-48983635)
chr1 (30-108)||(40439725-40439803)
chr1 (32-108)||(38878788-38878864)
chr1 (31-105)||(27742720-27742794)
chr1 (72-112)||(17082670-17082710)
chr1 (33-104)||(19442623-19442694)
chr1 (30-108)||(4213180-4213258)
chr1 (39-112)||(4858014-4858087)
chr1 (74-111)||(35529309-35529346)
chr1 (62-102)||(24806141-24806181)
[»] chr7 (19 HSPs)
chr7 (29-112)||(34978400-34978483)
chr7 (31-112)||(45419947-45420028)
chr7 (32-112)||(13152697-13152777)
chr7 (35-108)||(28249460-28249533)
chr7 (30-104)||(26749116-26749190)
chr7 (32-112)||(2008719-2008799)
chr7 (35-111)||(21103117-21103193)
chr7 (32-112)||(32777594-32777674)
chr7 (32-108)||(37352218-37352294)
chr7 (29-108)||(33845150-33845229)
chr7 (31-112)||(12007072-12007153)
chr7 (32-109)||(29723812-29723889)
chr7 (28-105)||(33057490-33057567)
chr7 (31-112)||(27570447-27570528)
chr7 (29-108)||(15325524-15325603)
chr7 (32-108)||(43807700-43807776)
chr7 (29-108)||(43081774-43081853)
chr7 (32-110)||(46881008-46881086)
chr7 (79-112)||(47448930-47448963)
[»] chr2 (17 HSPs)
chr2 (29-112)||(36587355-36587438)
chr2 (32-101)||(1079010-1079079)
chr2 (32-108)||(44239144-44239220)
chr2 (31-108)||(31578542-31578619)
chr2 (29-112)||(14871975-14872058)
chr2 (29-112)||(14877093-14877176)
chr2 (32-105)||(2427886-2427959)
chr2 (32-108)||(32944391-32944467)
chr2 (32-112)||(37731087-37731167)
chr2 (29-112)||(11965897-11965980)
chr2 (34-105)||(18510786-18510857)
chr2 (30-108)||(37316700-37316778)
chr2 (27-112)||(39234062-39234147)
chr2 (27-108)||(43057172-43057256)
chr2 (31-108)||(26480976-26481053)
chr2 (35-109)||(8847594-8847669)
chr2 (30-112)||(30831858-30831940)
[»] scaffold0276 (1 HSPs)
scaffold0276 (32-112)||(1748-1828)
[»] chr6 (10 HSPs)
chr6 (32-108)||(8645416-8645492)
chr6 (32-108)||(14910284-14910359)
chr6 (31-107)||(8505659-8505736)
chr6 (29-112)||(18064974-18065057)
chr6 (30-112)||(33712424-33712506)
chr6 (36-112)||(8991011-8991087)
chr6 (36-112)||(9015458-9015534)
chr6 (29-108)||(5739648-5739727)
chr6 (28-108)||(1287021-1287101)
chr6 (28-112)||(11635418-11635502)
[»] chr3 (15 HSPs)
chr3 (203-309)||(53680987-53681104)
chr3 (29-105)||(41443075-41443151)
chr3 (16-85)||(53681182-53681251)
chr3 (29-108)||(4494121-4494200)
chr3 (30-109)||(39099424-39099503)
chr3 (40-108)||(9692833-9692901)
chr3 (32-108)||(34307428-34307504)
chr3 (32-112)||(34456894-34456974)
chr3 (30-108)||(31104772-31104850)
chr3 (31-112)||(29525967-29526048)
chr3 (29-111)||(32363036-32363118)
chr3 (34-105)||(25188313-25188385)
chr3 (31-108)||(32145872-32145949)
chr3 (29-107)||(39713921-39713999)
chr3 (237-269)||(53680932-53680964)
[»] scaffold0128 (1 HSPs)
scaffold0128 (31-112)||(11038-11119)
[»] chr5 (14 HSPs)
chr5 (35-108)||(13089672-13089745)
chr5 (32-108)||(611972-612048)
chr5 (30-108)||(17097688-17097765)
chr5 (34-112)||(42446180-42446258)
chr5 (31-107)||(32872784-32872860)
chr5 (32-104)||(31748448-31748520)
chr5 (33-107)||(21210927-21211001)
chr5 (31-112)||(11954535-11954616)
chr5 (35-112)||(19981876-19981953)
chr5 (31-108)||(32284708-32284784)
chr5 (33-108)||(39195852-39195927)
chr5 (72-106)||(12739882-12739916)
chr5 (72-106)||(12802705-12802739)
chr5 (36-105)||(36562944-36563013)
[»] scaffold0618 (1 HSPs)
scaffold0618 (32-108)||(8840-8916)
[»] scaffold0201 (1 HSPs)
scaffold0201 (32-102)||(8586-8656)
[»] scaffold0184 (1 HSPs)
scaffold0184 (32-108)||(13444-13520)
[»] scaffold0078 (1 HSPs)
scaffold0078 (32-108)||(59324-59400)
[»] scaffold0034 (1 HSPs)
scaffold0034 (34-108)||(101790-101863)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 28772011 - 28772093
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28772011 aagagcaatgatatttgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 28772093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 25987671 - 25987750
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25987671 aaagagtaatgttatttgaacaaccatttcttgtgacaaccttttgaacaactaaattatacaaagaaatttaggtagtg 25987750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 44091070 - 44090994
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| ||||||||| |||| ||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  44091070 gagcaatgttatttgaacaaccttttcatgtgacaactttttggacaaccacattatacaaagaaatttaggtagtg 44090994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 2730849 - 2730928
Alignment:
Q  33 agcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||| ||| |||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||    
T  2730849 agcaatgatatttgaacaacaatttcttgtgacaaccttttgaataactaaattatacaaataaatttagatagtggcac 2730928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 26027082 - 26027004
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||| |||||| | ||||||||||||||| | |||| |||| ||||||||||||||||||||| |||||    
T  26027082 aagagcaatgttatttgaacagctatttcttgtgacaacttgttggccaaccaaattatacaaagaaatttagatagtg 26027004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 1068791 - 1068714
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||| ||||||||| |||  ||||||||| | ||||||||| | |||||||||||||||||||||||||    
T  1068791 agagcaatgttatttgaacaacctttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtg 1068714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 33451451 - 33451531
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||| ||||||||| |||||||||||||| | || |||||  |||||||||||||||| ||||||||||||||    
T  33451451 agagcaatgttatttgaacaaccctttcttgtgacaacttgttagacaatcaaattatacaaagaaa-ttaggtagtggcac 33451531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 34435624 - 34435704
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||| ||||||||| |||  ||||||||| | ||| ||||| | |||||||||||||||||||||||||||||    
T  34435624 gagcaatgttatttgaacaacctttttatgtgacaacttgttgcacaaccacattatacaaagaaatttaggtagtggcac 34435704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 15716860 - 15716939
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||| ||||||||  |||  ||||||||| | ||||||||| | |||||||||||||||||||||||||    
T  15716860 aaagagcaatgttatttgaacaacttttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtg 15716939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 33107752 - 33107834
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||||| ||||||||| |||  ||||||||  | ||||||||| | |||||||||||||||||||||||| ||||    
T  33107752 aagagcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagttgcac 33107834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 44061902 - 44061825
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||| |||||||| |||||||| ||||||||||| ||  | ||||||||| ||||||||||||||||||||| |||||    
T  44061902 agagtaatgttatttgaacaactatttcttgtgataatttgttggacaaccaaattatacaaagaaatttagatagtg 44061825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 9630307 - 9630231
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| | |||||| |||| |||||||||  | || ||||||||||||||| ||||||||||||||||||    
T  9630307 gagcaatgttatttaaacaactattttttgtgacaatttgttagacaactaaattatataaagaaatttaggtagtg 9630231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 37172244 - 37172171
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggta 105  Q
    |||||||||||| |||||||   |||||||| ||||  | ||||||||| ||||||||||||||||||||||||    
T  37172244 gagcaatgttatttgaacaattttttcttgtaacaatttgttggacaaccaaattatacaaagaaatttaggta 37172171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 9629744 - 9629679
Alignment:
Q  35 caatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaattt 100  Q
    ||||||||| ||||||||  |||||  ||||||| | ||||||||| |||||||||||||||||||    
T  9629744 caatgttatttgaacaactttttctcatgacaacttgttggacaaccaaattatacaaagaaattt 9629679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 42652777 - 42652697
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||| ||||||||  ||| |||||||||| ||||  |||||||||||||| |||   |||||| |||||||||    
T  42652777 gagcaatgttatttgaacaactctttattgtgacaactttttatacaactaaattatataaatggatttagatagtggcac 42652697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 4672162 - 4672104
Alignment:
Q  45 tgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttagg 103  Q
    ||||||||  |||||||||||| ||| || |||||| |||| |||||||||||||||||    
T  4672162 tgaacaactttttcttgtgacaccctattagacaaccaaataatacaaagaaatttagg 4672104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 12241258 - 12241180
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||| ||||||||  |||  ||||| ||  | ||||||||| | ||||||||||||||||||| |||||    
T  12241258 aagagcaatgttatttgaacaacttttttatgtgataatttgttggacaaccacattatacaaagaaatttagatagtg 12241180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 17775312 - 17775377
Alignment:
Q  33 agcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaat 98  Q
    ||||||||||| |||||||| ||||  ||| ||||| | | ||||||||||| |||||||||||||    
T  17775312 agcaatgttatttgaacaactattttatgtaacaacttgtaggacaactaaaatatacaaagaaat 17775377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 45405884 - 45405940
Alignment:
Q  45 tgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaattta 101  Q
    |||| ||||||||||| ||| ||| | ||||||||| |||||||||||| |||||||    
T  45405884 tgaataaccatttcttatgagaacttgttggacaaccaaattatacaaataaattta 45405940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 50506572 - 50506492
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50506572 gagcaatgttatttgaacaactatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 50506492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 14443385 - 14443304
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggc 110  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14443385 aaagagcaatgatatttgaacaaccattttttgtgacaaccttttggacaactaaattatacaaaggaatttaggtagtggc 14443304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 54000878 - 54000802
Alignment:
Q  36 aatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54000878 aatgttatttgaacaactatttattgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 54000802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 19651803 - 19651882
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19651803 aaagagtaatgatatttgaacaaccattttttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 19651882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 51577800 - 51577718
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51577800 aagagcagtgatatttgaataaccatttcttgtgacaaccttttggacaactaaattatataaagaaatttaggtagtggcac 51577718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 18316124 - 18316045
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||| |||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||    
T  18316124 aaagagcaatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtg 18316045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 39158291 - 39158209
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||||| ||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||| |||||    
T  39158291 aagagcaatgttatttgaacaaccatttattgtgacaacttattggacaaccaaattatacaaagaaatttaggtagcggcac 39158209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 5386557 - 5386481
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagt 107  Q
    ||||||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  5386557 agagcaatgatatttgaacaaccatttcttgtgacaactttttagacaactaaattatacaaagaaatttagatagt 5386481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 2738161 - 2738235
Alignment:
Q  38 tgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  2738161 tgttatttaaacaatcatttcttgtgacaaccttttggacaattaaattatacaaagaattttaggttgtggcac 2738235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 51255932 - 51255850
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||||| || |||||||||| |||||||||| | ||||||||| ||||| ||||||||||||||| |||||||||    
T  51255932 aagagcaatgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggcac 51255850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 1816560 - 1816639
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||| ||| ||| ||||||||||    
T  1816560 aaagagcaatgttatatgaacaatcatttcttgtgataatcttttagacaattaaattatataaaaaaaattaggtagtg 1816639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 41262234 - 41262312
Alignment:
Q  34 gcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||| ||||||||| |||||||||||||||| || |||||| |||| |||||||||||||||| || ||||||    
T  41262234 gcaatgttatttgaacaaccttttcttgtgacaacctattagacaaccaaataatacaaagaaatttagataatggcac 41262312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 22813608 - 22813685
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||| | ||||||  |||||||||||||| | |||||||| ||||||||| ||||||||||||||||||    
T  22813608 agagcaatgttatttaaacaactttttcttgtgacaacttgttggacaattaaattatataaagaaatttaggtagtg 22813685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 50050822 - 50050741
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggca 111  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||  |||||||| ||||||||||  |||||| ||||||||    
T  50050822 aagagcaatgttatatgaacaactatttattgtgacaactttttatacaactaagttatacaaagggatttagatagtggca 50050741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 5932664 - 5932727
Alignment:
Q  45 tgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||||| | ||||  |||||||||| ||||||||||||||||||||||||||||    
T  5932664 tgaacaaccatttcttctaacaattttttggacaattaaattatacaaagaaatttaggtagtg 5932727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 38519980 - 38519897
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||||| || | |||||||| |||||||||| | ||||||||| ||||| ||||||||||||||  |||||||||    
T  38519980 aaagagcaatgttatttgtataaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttaaatagtggcac 38519897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 29227128 - 29227206
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||| ||||||||| |||  ||||||||  | ||||||||| | |||||||||||||||||||||||||    
T  29227128 aagagcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccatattatacaaagaaatttaggtagtg 29227206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 2004075 - 2004152
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||| ||||||||| |||||||||| ||||| || |||||  |||| ||| ||||||||||||||||||    
T  2004075 agagcaatgttatttgaacaaccttttcttgtgataacctattagacaatcaaataatataaagaaatttaggtagtg 2004152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 10146975 - 10147052
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||| |||||||| | ||||| |||||||||||| ||| | ||||||||  |||||||||||||||||||||||||||    
T  10146975 agagtaatgttatttaaacaatcatttcttgtgataacttgttggacaatcaaattatacaaagaaatttaggtagtg 10147052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 52205039 - 52204958
Alignment:
Q  27 ataaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||| ||||| |||| ||||||| | |||||| ||| ||| | ||||||||| |||||||| ||||||||||| ||||||    
T  52205039 ataaagtgcaatattatttgaacaatcttttcttatgataacttgttggacaaccaaattataaaaagaaatttaagtagtg 52204958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 149412 - 149448
Alignment:
Q  72 ttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||| |||||||||||||||||||||||    
T  149412 ttggacaactaaaatatacaaagaaatttaggtagtg 149448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 21014180 - 21014104
Alignment:
Q  33 agcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtgg 109  Q
    ||||||||||| ||||||||| ||| |||||||||| | ||  ||||| |||||||||||||  |||||| ||||||    
T  21014180 agcaatgttatttgaacaaccttttattgtgacaacttcttatacaaccaaattatacaaagggatttagatagtgg 21014104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 48859007 - 48858931
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48859007 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttagatagtg 48858931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 5771631 - 5771710
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggca 111  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5771631 gagcaatgttatttgaacaatcatttcttgtgacaaccttttagacaactaaattatacaaagaaatttaggtagtggca 5771710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 42468777 - 42468700
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||| ||| |||||||||||||||||||||||  | |||||||||||| ||||||||||||||||||||||||    
T  42468777 agagcaatgatatttgaacaaccatttcttgtgacaatttgttggacaactaacttatacaaagaaatttaggtagtg 42468700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 7918953 - 7919029
Alignment:
Q  36 aatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||| ||||||||| |||||||||||||| | || |||||| |||||||||||||||||||||||||||||||    
T  7918953 aatgttatttgaacaaccctttcttgtgacaacttgttagacaaccaaattatacaaagaaatttaggtagtggcac 7919029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 47642492 - 47642570
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||| ||||||||||||| ||| |||||| | ||||||||| ||||||||||||||||||||| |||||    
T  47642492 aagagcaatgttatttgaacaaccattttttgggacaacttgttggacaaccaaattatacaaagaaatttagatagtg 47642570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 48983552 - 48983635
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||||||  | |||||||||| |||||||||| | ||||||||| ||||| ||||||||||||||| || ||||||    
T  48983552 aaagagcaatgttattggtacaaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagataatggcac 48983635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 40439725 - 40439803
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||| ||||||||| |||  ||||||||  | ||||||||| | |||||||||||||||||||||||||    
T  40439725 aagagcaatgttatttgaacaacctttttatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagtg 40439803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 38878788 - 38878864
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| ||||||||  |||  ||||||||| | ||||||||||| |||||| ||||||||||||||||||    
T  38878788 gagcaatgttatttgaacaacatttttatgtgacaacttgttggacaactatattatataaagaaatttaggtagtg 38878864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 27742794 - 27742720
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggta 105  Q
    ||||||||||||| ||||||||| |||  ||| ||||| | ||||||||| | | ||||||||||||||||||||    
T  27742794 agagcaatgttatttgaacaacctttttatgtaacaacttgttggacaacaacactatacaaagaaatttaggta 27742720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 17082670 - 17082710
Alignment:
Q  72 ttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  17082670 ttggacaaccatattatacaaagaaatttaggtagtggcac 17082710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 19442694 - 19442623
Alignment:
Q  33 agcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggt 104  Q
    ||||||||||| |||||||| ||||  ||| ||||| | ||||||||||||| |||||||||| || |||||    
T  19442694 agcaatgttatttgaacaactattttatgtaacaacttattggacaactaaaatatacaaagatatataggt 19442623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 4213258 - 4213180
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||| ||||||||| ||| |||||||||| | ||  ||||| |||||||| ||| | |||||| |||||    
T  4213258 aagagcaatgttatttgaacaaccctttattgtgacaacttcttatacaaccaaattatataaaaagatttagatagtg 4213180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 4858087 - 4858014
Alignment:
Q  39 gttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||| ||||||||| |||  ||||| ||  | ||||||||| | |||||||||||||||||| ||||||||||    
T  4858087 gttatttgaacaacctttttatgtgataatttattggacaaccacattatacaaagaaatttaagtagtggcac 4858014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 35529309 - 35529346
Alignment:
Q  74 ggacaactaaattatacaaagaaatttaggtagtggca 111  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  35529309 ggacaactaaaatttacaaagaaatttaggtagtggca 35529346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 24806141 - 24806181
Alignment:
Q  62 tgacaaccttttggacaactaaattatacaaagaaatttag 102  Q
    |||||||||||| || |||||||||||| ||||||||||||    
T  24806141 tgacaaccttttagataactaaattatataaagaaatttag 24806181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 34978483 - 34978400
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34978483 aaagagcaatgatattttaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 34978400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 45419947 - 45420028
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45419947 agagcaatattatttgaacaaccatttcttttgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 45420028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 13152777 - 13152697
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13152777 gagcaatgatatttgaacaaccatttcttatgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 13152697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 28249460 - 28249533
Alignment:
Q  35 caatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  28249460 caatgttatttgaacaaccatttcttgtgacaactttttggacaactaaattatacaaagaaatttaagtagtg 28249533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 26749190 - 26749116
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggt 104  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  26749190 aagagcaatgttatttgaacaaccattttttgtgacaatcttttggacaactaaattatacaaagagatttaggt 26749116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 2008719 - 2008799
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||| |||||||||||||  ||||||||| | ||||||||| | |||||||||||||||||||||||||||||    
T  2008719 gagcaatgttatttgaacaaccattttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtggcac 2008799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 21103193 - 21103117
Alignment:
Q  35 caatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggca 111  Q
    ||||| ||| |||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||| ||||||||    
T  21103193 caatgatatttgaacaaccatttcttgtgataacttgttggacaactaacttatacaaagaaatttagatagtggca 21103117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 32777594 - 32777674
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||| ||||||| | |||||||| | ||| | ||||||||| |||||||||||||||||||||||||||||||    
T  32777594 gagcaatgttatttgaacaatcttttcttgtaataacttgttggacaaccaaattatacaaagaaatttaggtagtggcac 32777674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 37352294 - 37352218
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| ||||||||||||||||||  |||| | ||||||||| |||||||||||| ||||||||||||||    
T  37352294 gagcaatgttatttgaacaaccatttcttgtaccaacttgttggacaaccaaattatacaaataaatttaggtagtg 37352218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 33845229 - 33845150
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||| ||||||||| |||| ||||||||  | ||||||||| | |||||||||||||||||||||||||    
T  33845229 aaagagcaatgttatttgaacaaccttttcatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagtg 33845150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 12007072 - 12007153
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||| || ||||| |||| |||||||||| | ||||||||| ||||| ||||||||||||||| |||||||||    
T  12007072 agagcaatgttatttgtacaactatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggcac 12007153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 29723812 - 29723889
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtgg 109  Q
    |||||||||||| || |||||||||| |||||||||| | ||||||||| ||||| ||||||||||||||| ||||||    
T  29723812 gagcaatgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtgg 29723889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 33057567 - 33057490
Alignment:
Q  28 taaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggta 105  Q
    ||||| |||||||||| ||||||| | |||||||||||||||| || |||||| |||| |||||||||||||||||||    
T  33057567 taaagggcaatgttatttgaacaatcttttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggta 33057490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 27570528 - 27570447
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||| || ||||| |||| |||||||||| | ||||||||| ||||| ||||||||||||| | |||||||||    
T  27570528 agagcaatgttatctgtacaactatttattgtgacaacttattggacaaccaaattttacaaagaaattttgatagtggcac 27570447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 15325524 - 15325603
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||| ||||||||| |||  ||||||||| | ||||||||| | |||||||||| |||||||| |||||    
T  15325524 aaagagcaatgttatttgaacaacctttttatgtgacaacttgttggacaaccacattatacaaaaaaatttagatagtg 15325603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 43807700 - 43807776
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||| |||||| ||||||||| |||||| ||||||  | ||| ||||| |||||||||||||| ||||| ||||||    
T  43807700 gagcagtgttatttgaacaaccctttcttatgacaatttgttgtacaaccaaattatacaaagacatttaagtagtg 43807776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 43081774 - 43081853
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||| ||||||||| ||||||||  |||  ||||||||  | || |||||| | |||||||||||||||||||||||||    
T  43081774 aaagatcaatgttatttgaacaacatttttatgtgacaatttgttagacaaccacattatacaaagaaatttaggtagtg 43081853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 46881086 - 46881008
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggc 110  Q
    |||||||||||| ||||||||| ||| || ||||||  ||||  ||||| ||||||||||| || |||||| |||||||    
T  46881086 gagcaatgttatttgaacaaccctttattatgacaattttttatacaaccaaattatacaacgacatttagatagtggc 46881008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 47448963 - 47448930
Alignment:
Q  79 actaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||| |||||||||||||||||||||||||||    
T  47448963 actaaaatatacaaagaaatttaggtagtggcac 47448930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 36587355 - 36587438
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36587355 aaagagcaatgttatttgaacaaccatttcttctgacaaccttttggacaactaaattatacaaagaaatttagatagtggcac 36587438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 1079010 - 1079079
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaattta 101  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1079010 gagcaatgttatatgaacaaccatttcttgtgacaaccttttagacaactaaattatacaaagaaattta 1079079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 44239220 - 44239144
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  44239220 gagcaatgttatttgaacaaccatttattgtgacaattttttggacaactaaattatacaaagaaatttaggcagtg 44239144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 31578619 - 31578542
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||| ||| ||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  31578619 agagcaatgatatttgaacaatcatttcttgtgacaacttgttggacaactaacttatacaaagaaatttaggtagtg 31578542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 14872058 - 14871975
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||| |||||||| |||||||||||||||||| ||||| | || |||||  |||||||||||||||||||||||||||||||    
T  14872058 aaagagaaatgttatttgaacaaccatttcttgtaacaacttgttagacaatcaaattatacaaagaaatttaggtagtggcac 14871975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 14877176 - 14877093
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||| |||||||| |||||||||||||||||||||||| | || |||||| |||||  ||||||||||||||||||||||||    
T  14877176 aaagagaaatgttatttgaacaaccatttcttgtgacaacttgttagacaaccaaatttaacaaagaaatttaggtagtggcac 14877093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 2427886 - 2427959
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggta 105  Q
    |||||||||||| ||||||||||||| |||||||||  | |||||||||||||||||||||||||| |||||||    
T  2427886 gagcaatgttatttgaacaaccattttttgtgacaatttgttggacaactaaattatacaaagaaaattaggta 2427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 32944391 - 32944467
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||  ||| |||| ||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||    
T  32944391 gagcaatcatatttgaataaccatttcttgtgataaccttttggacaattaaattatataaaaaaatttaggtagtg 32944467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 37731087 - 37731167
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||| ||||||||| |||  ||||||||| | ||| ||||| | |||||||||||||||||||||||||||||    
T  37731087 gagcaatgttatttgaacaacctttttatgtgacaacttgttgcacaaccacattatacaaagaaatttaggtagtggcac 37731167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 11965980 - 11965897
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||||| ||||||||| |||  ||||||||| | ||||||||| | |||||||| |||||||||| |||||||||    
T  11965980 aaagagcaatgttatttgaacaacctttttatgtgacaacttgttggacaaccacattatacatagaaatttagatagtggcac 11965897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 18510857 - 18510786
Alignment:
Q  34 gcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggta 105  Q
    |||||||||| ||||||||  |||||||||||||||| || |||||| |||| |||||||||||||||||||    
T  18510857 gcaatgttatttgaacaacattttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggta 18510786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 37316700 - 37316778
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||| ||||||||| |||  | ||||||| | ||||||||| | |||||||||||||||||||||||||    
T  37316700 aagagcaatgttatttgaacaacctttttctatgacaacttgttggacaaccacattatacaaagaaatttaggtagtg 37316778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 39234062 - 39234147
Alignment:
Q  27 ataaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||| ||| || ||| ||||||||  |||||||||||||||| || |||||| |||| |||||||||||||||||| |||||||    
T  39234062 ataaagggcattgatatttgaacaacattttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggtggtggcac 39234147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 43057256 - 43057172
Alignment:
Q  27 ataaagagcaatgttata---tgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||||||   |||||||  |||| |||||| || ||||||||||||||||||||| ||| ||||||| ||||||    
T  43057256 ataaagagcaatgttataccatgaacaattattttttgtgataatcttttggacaactaaattatataaataaatttaagtagtg 43057172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 26480976 - 26481053
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||| ||||||||| ||| |||||||||| | ||  ||||| |||||||||||||  |||||| |||||    
T  26480976 agagcaatgttatttgaacaaccctttattgtgacaacttcttatacaaccaaattatacaaagggatttagatagtg 26481053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 8847669 - 8847594
Alignment:
Q  35 caatgttatatgaacaaccatttct-tgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtgg 109  Q
    ||||||||| ||||||| | ||||| ||||||||| | |||||||||   ||||||||||||||||||| ||||||    
T  8847669 caatgttatttgaacaatcttttctatgtgacaacttgttggacaaccgcattatacaaagaaatttagatagtgg 8847594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 30831940 - 30831858
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||| ||||||||| ||||||| ||||| |||||||||| | ||  ||||  |||||||||||||  |||||| |||||||||    
T  30831940 aagatcaatgttatttgaacaatcatttattgtgacaacttcttatacaatcaaattatacaaagggatttagatagtggcac 30831858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 1828 - 1748
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1828 gagcaatgttatgtgaacaaccatttcttgcgacaaccttttggacaactaaattatacaaagaaatttagatagtggcac 1748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 8645492 - 8645416
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8645492 gagcaatgatatttgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 8645416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 14910359 - 14910284
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||| ||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  14910359 gagcaacgttatttgaacaac-atttcttttgagaaccttttggacaactaaattatacaaagaaatttaggtagtg 14910284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 8505659 - 8505736
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaac-taaattatacaaagaaatttaggtagt 107  Q
    ||||||||| ||| ||||||| |||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  8505659 agagcaatgatatttgaacaatcatttcttgtgacaattttttggacaacttaaattatacaaagaaatttaggtagt 8505736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 18064974 - 18065057
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||| ||||||||| ||||||||  |||  ||||||||| | ||||||||| | |||||||||||||||||||||||||||||    
T  18064974 aaagatcaatgttatttgaacaacttttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtggcac 18065057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 33712506 - 33712424
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||||||| ||||||||| |||  ||| ||||| | ||||||||| | |||||||||||||||||||||||| ||||    
T  33712506 aagagcaatgttatttgaacaacctttttatgtaacaacttgttggacaaccacattatacaaagaaatttaggtagttgcac 33712424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 8991087 - 8991011
Alignment:
Q  36 aatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||| ||||||||| ||||||| |||| ||| ||||||||||||| | |||||||||||| | ||||||||||    
T  8991087 aatgttatttgaacaaccctttcttgagacagcctcttggacaactaaaatttacaaagaaattaaagtagtggcac 8991011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 9015534 - 9015458
Alignment:
Q  36 aatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||| ||||||||| ||||||| |||| ||| ||||||||||||| | |||||||||||| | ||||||||||    
T  9015534 aatgttatttgaacaaccctttcttgagacagcctcttggacaactaaaatttacaaagaaattaaagtagtggcac 9015458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 5739648 - 5739727
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||| |||||| ||||||||| ||||||| | ||||||||  |||||| | ||||||| ||||||||||    
T  5739648 aaagagcaatgttatttgaacatccatttcttatgacaacttgttggacaatcaaattaaataaagaaaattaggtagtg 5739727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 1287101 - 1287021
Alignment:
Q  28 taaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||||| ||||||| | ||| |||||||||| | ||  ||||||||||||||||||  ||||||| |||||    
T  1287101 taaagagcaatgttatttgaacaatcctttattgtgacaacttcttatacaactaaattatacaaaagaatttagatagtg 1287021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 11635418 - 11635502
Alignment:
Q  28 taaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||| | |||| ||||||||| ||| |||||||||  | ||  ||||| |||||||||||||| |||||| |||||||||    
T  11635418 taaagagcagtcttatttgaacaaccctttattgtgacaatttcttatacaaccaaattatacaaagagatttagatagtggcac 11635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 53681104 - 53680987
Alignment:
Q  203 aaacaagagcacacaattttagtactttgtatagttaatagttagatgaatgtacgtt-----------agttgtatggttcccgataaatcggacccac 291  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||           |||||||||||||||||||||| ||||||||    
T  53681104 aaacaagagcacacaattttagtactttctatagttaatagttagatgaatgtacgttagttttatgttagttgtatggttcccgataaattggacccac 53681005  T
Q  292 aaaaagttgggttgttat 309  Q
    ||||| ||||||||||||    
T  53681004 aaaaaattgggttgttat 53680987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 41443075 - 41443151
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggta 105  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41443075 aaagagcaatgatatttgaacaatcatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggta 41443151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 53681251 - 53681182
Alignment:
Q  16 atcatactgacataaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaat 85  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53681251 atcatactaacataaagagcaatgttatatgaacaaccattttttgtgacaaccttttggacaactaaat 53681182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 4494121 - 4494200
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||| |||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||    
T  4494121 aaagagcaatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtg 4494200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 39099503 - 39099424
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtgg 109  Q
    |||||||||||||| |||||||  |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  39099503 aagagcaatgttatttgaacaattattttttgtgacaacattttggacaattaaattatacaaagaaatttaggtagtgg 39099424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 9692901 - 9692833
Alignment:
Q  40 ttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  9692901 ttatttgaacaaccatttcttgtgacaaccttttagacaactaaattatacaaagaaagttaggcagtg 9692833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 34307428 - 34307504
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| ||||||| | |||||||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  34307428 gagcaatgttatttgaacaatcctttcttgtgacaacttattggacaaccaaattatacaaagaaatttaggtagtg 34307504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 34456974 - 34456894
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||| ||| |||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  34456974 gagcaatgatatttgaacaattatttcttgtgacaatcttttagacaactaaattatacaaagaaatttaggtattggcac 34456894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 31104850 - 31104772
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||||| ||||||||  |||||||||||||  | || |||||||||||||||| |||||||||||||||||    
T  31104850 aagagcaatgttatttgaacaactttttcttgtgacaatttgtttgacaactaaattatacgaagaaatttaggtagtg 31104772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 29526048 - 29525967
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||| || |||||||||| |||||||||| | ||||||||| ||||| |||||| |||||||| |||||||||    
T  29526048 agagcaatgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaaaaaatttagatagtggcac 29525967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 32363118 - 32363036
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggca 111  Q
    |||||| |||||||| ||||||||| |||| ||||||||  | ||||||||| | |||||||||||| |||||||||||||||    
T  32363118 aaagagaaatgttatttgaacaaccttttcatgtgacaatttattggacaaccacattatacaaagagatttaggtagtggca 32363036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 25188313 - 25188385
Alignment:
Q  34 gcaatgttatatgaacaaccatttctt-gtgacaaccttttggacaactaaattatacaaagaaatttaggta 105  Q
    |||||||||| ||||||||| ||| || |||||||||| || ||||||||||| |||||||||||||||||||    
T  25188313 gcaatgttatttgaacaaccttttttttgtgacaacctattagacaactaaataatacaaagaaatttaggta 25188385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 32145872 - 32145949
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||| |||||||||||||   | |||||| | ||||| || |||||| |||||||||||||||||||||    
T  32145872 agagcaatgttatttgaacaaccatttacggggacaacttgttggataattaaattttacaaagaaatttaggtagtg 32145949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 39713921 - 39713999
Alignment:
Q  29 aaagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagt 107  Q
    ||||| ||||||||| ||||||||||||| |||||| ||  | ||||||||| |||||||||||| || ||||| ||||    
T  39713921 aaagaacaatgttatttgaacaaccattttttgtgataatttgttggacaaccaaattatacaaaaaattttagatagt 39713999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 53680964 - 53680932
Alignment:
Q  237 ttaatagttagatgaatgtacgttagttgtatg 269  Q
    |||||||||||||||||||||||||||| ||||    
T  53680964 ttaatagttagatgaatgtacgttagttttatg 53680932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 11119 - 11038
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||| ||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||||    
T  11119 agagcaatgttatttgaacaaccctttcttttgaaaaccttttcgacaactaaattatacaaagaaatttagttagtggcac 11038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 13089672 - 13089745
Alignment:
Q  35 caatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13089672 caatgttatttgaacaaccatttcttatgacaaccttttgaacaattaaattatacaaagaaatttaggtagtg 13089745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 612048 - 611972
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||||||||| ||  |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  612048 gagcaatgttatatgaaaaataatttctcgtgacaaccttttagacaactaaattatacaaagaaatttaggtagtg 611972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 17097688 - 17097765
Alignment:
Q  30 aagagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||| |||||||| |||||| ||||||||||||||||  | |||||||||||||||||||||||||| ||||||||||    
T  17097688 aagagtaatgttatttgaaca-ccatttcttgtgacaatttgttggacaactaaattatacaaagaaaattaggtagtg 17097765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 42446180 - 42446258
Alignment:
Q  34 gcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    |||||||||| ||||||||  |||||||||||||||| || |||||| |||| ||||||||||||||||||| ||||||    
T  42446180 gcaatgttatttgaacaacattttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggtaatggcac 42446258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 32872784 - 32872860
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagt 107  Q
    ||||||||||||| ||||||||| |||||||||||||| | ||||||||  ||| |||| |||||||||||||||||    
T  32872784 agagcaatgttatttgaacaaccctttcttgtgacaacttgttggacaatcaaaatataaaaagaaatttaggtagt 32872860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 31748520 - 31748448
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggt 104  Q
    |||| ||||||| ||||||| ||||| |||||||||| | ||||||||  |||||||||||||||||||||||    
T  31748520 gagcgatgttatttgaacaatcattttttgtgacaacttattggacaatcaaattatacaaagaaatttaggt 31748448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 21211001 - 21210927
Alignment:
Q  33 agcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagt 107  Q
    ||||||||||| ||||||||| |||  ||||||||| | ||| ||||| | ||||||||||||||||||||||||    
T  21211001 agcaatgttatttgaacaacctttttatgtgacaacttattgaacaaccacattatacaaagaaatttaggtagt 21210927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 11954616 - 11954535
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||||||| ||||||||||||| || ||||||| | ||  |||||||||||||||||||  | |||| |||||||||    
T  11954616 agagcaatgttatttgaacaaccatttattttgacaacttcttatacaactaaattatacaaagtgacttagatagtggcac 11954535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 19981876 - 19981953
Alignment:
Q  35 caatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtggcac 112  Q
    ||||||||| | ||||||  |||||| ||||||  | |||||||| ||||||||||||| |||||||| |||||||||    
T  19981876 caatgttatttaaacaacattttcttatgacaatttgttggacaattaaattatacaaaaaaatttagatagtggcac 19981953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 32284708 - 32284784
Alignment:
Q  31 agagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||| |||||||| | ||||||| ||| ||| |||||| | ||||||||||||| ||| |||||||||||||||||||    
T  32284708 agagaaatgttatttaaacaaccttttgttgagacaacttgttggacaactaaa-tatccaaagaaatttaggtagtg 32284784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 39195927 - 39195852
Alignment:
Q  33 agcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    ||||||||||| |||||||   |||  ||||||||  | ||||||||| | |||||||||||||||||||||||||    
T  39195927 agcaatgttatttgaacaatttttttatgtgacaatttgttggacaaccacattatacaaagaaatttaggtagtg 39195852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 12739916 - 12739882
Alignment:
Q  72 ttggacaactaaattatacaaagaaatttaggtag 106  Q
    ||||||||| |||||||||||||||||||||||||    
T  12739916 ttggacaaccaaattatacaaagaaatttaggtag 12739882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 12802739 - 12802705
Alignment:
Q  72 ttggacaactaaattatacaaagaaatttaggtag 106  Q
    ||||||||| |||||||||||||||||||||||||    
T  12802739 ttggacaaccaaattatacaaagaaatttaggtag 12802705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 36562944 - 36563013
Alignment:
Q  36 aatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggta 105  Q
    |||||||| ||||||||| ||| ||| |||||| | ||||||||| ||| || ||||||||||| |||||    
T  36562944 aatgttatttgaacaaccctttgttgggacaacttgttggacaaccaaactacacaaagaaattaaggta 36563013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 8840 - 8916
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| ||||||||| |||| ||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  8840 gagcaatgttatttgaacaaccttttcatgtgacaactttttggacaaccacattatacaaagaaatttaggtagtg 8916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 8656 - 8586
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttag 102  Q
    |||||||||||| |||||||| ||||||||||||||| | || ||||||||||||||| ||||||||||||    
T  8656 gagcaatgttatttgaacaactatttcttgtgacaacttgttagacaactaaattatataaagaaatttag 8586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 13444 - 13520
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| | ||||||  ||| |||||||||| | |||||||||||||||||||||||||||||||| ||||    
T  13444 gagcaatgttatttaaacaactcttttttgtgacaacttattggacaactaaattatacaaagaaatttaggcagtg 13520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 59400 - 59324
Alignment:
Q  32 gagcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||||| | ||||||  ||| |||||||||| | |||||||||||||||||||||||||||||||| ||||    
T  59400 gagcaatgttatttaaacaactcttttttgtgacaacttattggacaactaaattatacaaagaaatttaggcagtg 59324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 101790 - 101863
Alignment:
Q  34 gcaatgttatatgaacaaccatttcttgtgacaaccttttggacaactaaattatacaaagaaatttaggtagtg 108  Q
    |||||||||| || |||||| |||||||||||||| | ||| ||||| |||||||||||||||||||||||||||    
T  101790 gcaatgttatttgcacaaccctttcttgtgacaacttgttg-acaaccaaattatacaaagaaatttaggtagtg 101863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University