View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_56 (Length: 314)
Name: NF19379_high_56
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_56 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 35363224 - 35363520
Alignment:
| Q |
18 |
aatcaacttaacaaataatcaagtttgtaatagttgatgaaaacatacacagatgccaattcagacggcttcaagattgcagcacaaccagcagccagag |
117 |
Q |
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| T |
35363224 |
aatcaacttaacaaataatcaagtttgtaatagttgatgaaaacatacacagatgccaattcagacggcttcaagattgcagcacaaccagcagccagag |
35363323 |
T |
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| Q |
118 |
ctggagcaattttccttgccgccattgagagaggatagttcctaaaatataaaatcaattactgaaaaggaattcataagcaaataagatgaagaaaaag |
217 |
Q |
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| T |
35363324 |
ctggagcaattttccttgccgccattgagagaggatagttcctaaaatataaaaacaattactgaaaaggaattcataagcaaataagatgaagaaaaaa |
35363423 |
T |
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| Q |
218 |
cagatgtcataccatggagtaattaatgcaacaacaccaataggctccttgagaacatagcttttgaaggtattcataggaagagatataggagctt |
314 |
Q |
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| T |
35363424 |
cagatgtcataccatggagtaattaatgcaacaacaccaataggctccttgagaacatagcttttgaaggtattcataggaagagatataggagctt |
35363520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 35383703 - 35383581
Alignment:
| Q |
39 |
agtttgtaatagttgatgaaaacatacacagatgccaattcagacggcttcaagattgcagcacaaccagcagccagagctggagcaattttccttgccg |
138 |
Q |
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| T |
35383703 |
agtttgtaataattgatgagaacatacacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcg |
35383604 |
T |
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| Q |
139 |
ccattgagagaggatagttccta |
161 |
Q |
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| T |
35383603 |
ccattaagagaggatagttccta |
35383581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 35383471 - 35383385
Alignment:
| Q |
226 |
ataccatggagtaattaatgcaacaacaccaataggctccttgagaacatagcttttgaaggtattcataggaagagatataggagc |
312 |
Q |
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| T |
35383471 |
ataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagc |
35383385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 44178175 - 44178108
Alignment:
| Q |
59 |
aacatacacagatgccaattcagacggcttcaagattgcagcacaaccagcagccagagctggagcaa |
126 |
Q |
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| T |
44178175 |
aacatacaaagatgccaattcagatggcttcaatatcgcagcacaaccagcagcaagagcaggagcaa |
44178108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 44177673 - 44177623
Alignment:
| Q |
225 |
cataccatggagtaattaatgcaacaacaccaataggctccttgagaacat |
275 |
Q |
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| T |
44177673 |
cataccatggagttattaatccaacaacaccaataggctccttaagaacat |
44177623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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