View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_6 (Length: 593)
Name: NF19379_high_6
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 238 - 582
Target Start/End: Complemental strand, 38421239 - 38420900
Alignment:
| Q |
238 |
gttggtataaattcctttcttcatagccacactaataatatggtggaagctgaattctaattatcatgtgaagcaagttattcttaatccaaatacaagt |
337 |
Q |
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| T |
38421239 |
gttgctataaattcctttcttcaaagccacactaataatatggtggaagctgaattctaattatcatgtgaagcaagttattcttaatccaaatacaagt |
38421140 |
T |
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| Q |
338 |
acaatctttgtgacaagcatcacatgcacattaattggaagtgaatccacagtagcttaatcatccaagcctnnnnnnnatacccacttattaaattaat |
437 |
Q |
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| T |
38421139 |
acaatctttgtgacaagcatcacatgcacatt----gggagtgaatccacagtagcttaatcatccaagcctcccccc-atacccacttattaaattaat |
38421045 |
T |
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| Q |
438 |
tattagtacatacataccactatataaattaatcaaatgcatactaaaatttgcattccattgcattgcattgaaggtgatcatagaattgtttgaatta |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38421044 |
tattagtacatacataccactatataaattaatcaaatgcatactaaaatttgcattccattgcattgcattgaaggtgatcatagaattgtttgaatta |
38420945 |
T |
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| Q |
538 |
ataataagaatgtttaactggggttccattgttgtgacagtgatg |
582 |
Q |
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| T |
38420944 |
ataataagaatgtttaactggggttccattgttgtgacagtgatg |
38420900 |
T |
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