View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_high_63 (Length: 303)
Name: NF19379_high_63
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 37941568 - 37941854
Alignment:
| Q |
1 |
gagggtacttttgcagtggcttttgtggtgtttgatcatgaattgttcgaaaggtgaaagcttggttttggctgtgcatgttgtatatattattgagagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941568 |
gagggtacttttgcagtggcttttgtggtgtttgatcatgaattgttcgaaaggtgaaagcttggttttggctgtgcatgttgtatatattattgagagg |
37941667 |
T |
|
| Q |
101 |
ctgtttaaaatgatcaaatgaagaagatagcaattggttgtgaatggaagaggatggaggaagaagattgtgtgcaacgggacgaagaagattataagga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941668 |
ctgtttaaaatgatcaactgaagaagatagaaattggttgtgaatggaagaggatggaggaagaagattgtgtgcaacgggacgaagaagattataagga |
37941767 |
T |
|
| Q |
201 |
gggaatgttattgttgaagcagaagtaaagagatccaaccttgtttttgggaaatgatgagaagatgtgatgaaaggtggtagttct |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37941768 |
gggaatgttattgttgaagcagaagtaaagagatccaaccttgtttttgggaaatgatgagaagatgtgatgaaaggtggtagttct |
37941854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University