View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_68 (Length: 292)
Name: NF19379_high_68
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 6634817 - 6634554
Alignment:
| Q |
9 |
gaagaatatgagacttttcaatattgttgagnnnnnnntaatgactttgtatatagttgaagagttgcatattttgaatatgtagattcatcgagtaatt |
108 |
Q |
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| T |
6634817 |
gaagaatatgagacttttcaatattgttgagaaaaaaataatgactttgtatatagttgaagagttgcatattttgaatatgtagattcatcgagtaatt |
6634718 |
T |
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| Q |
109 |
tttgttcttattaatgagagcataatcaaattcaagtttatgtatagtatagacatttttgttttgattgatcatatattannnnnnngttttaacgagt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
6634717 |
tttgttcttattaatgagagcataatcaaattcaagtttatgtatagtatagacaattttgttttgattgatctgatattatttttttgttttaacgagt |
6634618 |
T |
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| Q |
209 |
ctcgcgccaaaattcataagcacaaagtgcggaaaagatgaat-ttgcaagtttgaatttgcgt |
271 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
6634617 |
ctcgcgccaaaattcatacgcacaaagtgcggagaagatgaatattgcaagtttgaatttgcgt |
6634554 |
T |
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