View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_7 (Length: 584)
Name: NF19379_high_7
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 7630565 - 7630145
Alignment:
| Q |
11 |
atgaagctacttggtttggcaagaggacaatccattaacaatccttgttacacaatcagagtataatatgaatcgtctgatcttaatcaaatgatcacaa |
110 |
Q |
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| T |
7630565 |
atgaagctacttggtttggcaagaggacaatctattaacaatccttgttacacaatcagagtataatatgaatcgtctgatcttaattaaatcgtcacaa |
7630466 |
T |
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| Q |
111 |
tgtctcaaatatgtgaataatcgatctattaaccgcatgaaatccaaattcatgatacaatcaagctaatttctcaaactcttgattagtatttgtgcta |
210 |
Q |
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| T |
7630465 |
tatctcaaatatgtgaataatcgatctattaaccggatgaaatccaaattcatgatacaatcaagctaattcctcaaactcttgattagtatttgtgcta |
7630366 |
T |
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| Q |
211 |
acaaggaaaaaagtgaagtgaagtttaattaatttgatgtaatgggtctttcttcactttttgtttagaatataggaacttaattattactatgtgtact |
310 |
Q |
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| T |
7630365 |
acaaggaaaaaagtgaagtgaagtctaattaatttgatgtaatgtatctttcttcactttttgtttagaatataggaacttaattattactatgtgtact |
7630266 |
T |
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| Q |
311 |
tatctagttgttggacatttggttgattttaatatgtgttagatgatgcaaacccatgttatgttgaagtgtttgcttaattattaatagaagtgtgttg |
410 |
Q |
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| T |
7630265 |
tatctagttgttggacatttggttgattttaatatgtgttagatgatgcaaacccatgttatgttgaagtgtttgctttattattaatagatgtgtgttg |
7630166 |
T |
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| Q |
411 |
attccttttgtattgtacaaa |
431 |
Q |
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| T |
7630165 |
attccttttgtattgtacaaa |
7630145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 482 - 568
Target Start/End: Complemental strand, 7630087 - 7630001
Alignment:
| Q |
482 |
ccatacgtgcacgccgacgcttaaaaagatttattatggttgagacagcatctcataaaaaggggcaaattatgttttgaactttgt |
568 |
Q |
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| T |
7630087 |
ccatacgtgcacgccgacgcttaaaaagatttattatggttgagacagcatctcataaaaaggggcaaattatgttttgaactttgt |
7630001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 7641516 - 7641487
Alignment:
| Q |
11 |
atgaagctacttggtttggcaagaggacaa |
40 |
Q |
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| T |
7641516 |
atgaagctacttggtttggcaagaggacaa |
7641487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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