View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_high_71 (Length: 270)
Name: NF19379_high_71
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_71 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 29336928 - 29337181
Alignment:
| Q |
2 |
ggtgtaaaaatagagcatgaatgagatgatgaaaatctagtgattataagttctaaattacctagaaaccaagaaagaacacaatcagaagtttagaaca |
101 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29336928 |
ggtgcaaaactagagcatgaatgagatgatgaaaatctagtgattataaagagtg--ttacctagaaaccaagaaagaacacagtcagaagtttagaaca |
29337025 |
T |
|
| Q |
102 |
ggttgaaaataaagagtgttacataccctctcttaagtt-caagttcaaactgatggttgcttgcttctgagatcaactataaactgctttggaaattgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29337026 |
ggttgaaaataaagagtgttacataccctctcttaagtttcaagttcaaactgatggttgcttgcttctgagatcaactataaactgctttggaaattgg |
29337125 |
T |
|
| Q |
201 |
agacatgtttttccattgtttcttctttggaatggttggttatgagaagacaaaag |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29337126 |
agacatgtttttccattgtttcttctttggaatggttggttatgagaagacaaaag |
29337181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University