View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_high_72 (Length: 266)
Name: NF19379_high_72
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_72 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 7947861 - 7947611
Alignment:
| Q |
1 |
ccttggacacctatctaactggaccaccatagaattttctcaaaaaacatgttttacataatgccatatttagaaatgctttgtttaaatatgcctggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7947861 |
ccttggacacctatctaactggaccaccatagaattttctcaaaaaacatgttttacataatgccatatttagaaatgctttgtttaaatatgcctggtc |
7947762 |
T |
|
| Q |
101 |
tgttaaaaaatttaaattctaaacgtgataaattcactatcatacaccatttttagtacttgtctgaccttttcgaaggcctggcgtgttagcctactta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7947761 |
tgttaaaaaatttaaattctaaacgtgataaattcactatcatacaccatttttagtacttgtctgaccttttcgaaggcctggcgtgttagcctactta |
7947662 |
T |
|
| Q |
201 |
aaagcctgacaaagtaaaatttcta-gtaggctaatggttaaattattgaa |
250 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7947661 |
aaagcctgacaaagtaaaatttctacgtaggctaatggttaaattattgaa |
7947611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University