View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_high_77 (Length: 250)
Name: NF19379_high_77
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_77 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 55086801 - 55087040
Alignment:
| Q |
1 |
ggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttcctgcttgaacgacctatgattaaattcatattgcaaaaaagtcatatgaacaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55086801 |
ggtcttacaattagctgcaaagaagatgtatttttacatacaacttcctgcttgaatggcctatgattaaattcatattgcaaaaaagtcatatgaacaa |
55086900 |
T |
|
| Q |
101 |
tagcattagacagtaggattgactagttgagacgactttggcgcataaaagtgcatgttagctaaaagtcgaacctaaacatacaaaatcataacagaag |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||| || ||||||| ||| |
|
|
| T |
55086901 |
tagcattagacagtacgattgactagttgagacaactttggtgcataaaagtgcatgttagctaaaattcaaacctaaacatacataaacataacataag |
55087000 |
T |
|
| Q |
201 |
tcaaataatcatctcaattccttactgaaagaaattcatc |
240 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
55087001 |
tcaaataaccatctcaattccttaatgcaagaaattcatc |
55087040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 38042062 - 38042200
Alignment:
| Q |
1 |
ggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttcctgcttgaacgacctatgattaaattcatattgcaaaaaagtcatatgaacaa |
100 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||| ||||| ||||||||| || ||||||||||||||||| | | |
|
|
| T |
38042062 |
ggtcttacaattccgtgcaaggaagatgtgtttttacgtacaacttcccgcttgaacggcctataattaaattcttacggcaaaaaagtcatatgatcga |
38042161 |
T |
|
| Q |
101 |
tagcattagacagtaggattgactagttgagacgacttt |
139 |
Q |
| |
|
|| ||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
38042162 |
taacatcgcacagtaggattgactagttgtgacaacttt |
38042200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 50906843 - 50906767
Alignment:
| Q |
1 |
ggtcttacaatttgctgcaaagaagatgtgtttttacatacaacttcctgcttgaacgacctatgattaaattcata |
77 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||| |
|
|
| T |
50906843 |
ggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttcccgcttgaacggcctataaataaattcata |
50906767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 3072391 - 3072471
Alignment:
| Q |
52 |
ttgaacgacctatgattaaattcatattgcaaaaaagtcatatgaacaatagcattagacagtaggattgactagttgaga |
132 |
Q |
| |
|
||||||| |||| ||||||| || | |||||||||||||||||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
3072391 |
ttgaacggcctagaattaaatccacactgcaaaaaagtcatatgaacgaaaacattacacagtaggattaactagttgaga |
3072471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University