View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_high_78 (Length: 245)
Name: NF19379_high_78
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_78 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 49353224 - 49353464
Alignment:
| Q |
1 |
aatggttgcataaagcttcaaacattacccaatggaataggaaatttgataagccttcggcagctaatcataactacaaagcaatatactttaccagaaa |
100 |
Q |
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| T |
49353224 |
aatggttgcataaagcttaaaaaattacccaatggaataggaaatttgataagccttcggcagctaatcataactacaaagcaatatactttaccagaaa |
49353323 |
T |
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| Q |
101 |
aagagattgcaaagttgacttgtttagaaattttatcagtcaattcttgtgacaatctagagacgttgttgcttgaagggatacaactttctaacctaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353324 |
aagagattgcaaagttgacttgtttagaaattttatctgtcaattcttgtgacaatctagagacgttgttgcttgaagggatacaactttctaacctaaa |
49353423 |
T |
|
| Q |
201 |
gtggttgagtatttcttcttgtggaaatctaaagcctatgc |
241 |
Q |
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||||||| |||||||||||||||||||||||||| |||||| |
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| T |
49353424 |
gtggttgggtatttcttcttgtggaaatctaaagtctatgc |
49353464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 49341846 - 49342029
Alignment:
| Q |
2 |
atggttgcataaagcttcaaacattacccaatggaataggaaatttgataagccttcggcagctaatcataactacaaagcaatatactttaccagaaaa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||| |||||| ||||| || |
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| T |
49341846 |
atggttgcataaagcttcaaacattacccaatggaataggaaatttgatcagccttcggcagctctatataactacacatcaatctactttcccagacaa |
49341945 |
T |
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| Q |
102 |
agagattgcaaagttgacttgtttagaaattttatcagtcaattcttgtgacaatctagagacgttgttgcttgaagggataca |
185 |
Q |
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| T |
49341946 |
agagattgcaaagttgtcatctttagaatgtttatccgtcgtatcttgtgacaatctagaggctttgtttcttgaaggaataca |
49342029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 32783044 - 32782852
Alignment:
| Q |
2 |
atggttgcataaagcttcaaacattacccaatggaataggaaatttgataagccttcggcagctaatcataactacaaagcaatatactttaccagaaaa |
101 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32783044 |
atggatgcatagagcttcaaacattacccaatggaataggaaatttgatcagccttcggcagctagtcataactacaaagcaatatactttaccagaaaa |
32782945 |
T |
|
| Q |
102 |
agagattgcaaagttgacttgtttagaaattttatcagtcaattcttgtgacaatctagagacgttgttgcttgaagggatacaactttctaa |
194 |
Q |
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| T |
32782944 |
agagattgcaaagttgacttctttagaaaggtttgatgtcacatattgtgacaatctagagaccttgctgtttgaaggaatacaactttctaa |
32782852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 29744589 - 29744734
Alignment:
| Q |
11 |
taaagcttcaaacattacccaatggaataggaaatttgataagccttcggcagctaatcataactacaaagcaatatactttaccagaaaaagagattgc |
110 |
Q |
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||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| | ||| ||||| ||||||||||| |
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| T |
29744589 |
taaagtttgaaacattgcccaatggaataggaaatttgatcagccttcggcagctacatataaccgcaatgcaatctgattttccagacaaagagattgc |
29744688 |
T |
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| Q |
111 |
aaagttgacttgtttagaaattttatcagtcaattcttgtgacaat |
156 |
Q |
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| T |
29744689 |
caaattgacttctttagaatttttatctatccattcttgtgacaat |
29744734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 29601671 - 29601561
Alignment:
| Q |
11 |
taaagcttcaaacattacccaatggaataggaaatttgataagccttcggcagctaatcataactacaaagcaatatactttaccagaaaaagagattgc |
110 |
Q |
| |
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|||||||| ||| |||||||||||| |||||||||||||| |||||||| || ||| ||||| |||| ||||| || ||| ||||| ||||||||||| |
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| T |
29601671 |
taaagcttgaaaaattacccaatgggataggaaatttgatcagccttcgacaactacatataaccacaatgcaatctagttttccagacaaagagattgc |
29601572 |
T |
|
| Q |
111 |
aaagttgactt |
121 |
Q |
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|| ||||||| |
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| T |
29601571 |
caaattgactt |
29601561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 29751623 - 29751733
Alignment:
| Q |
11 |
taaagcttcaaacattacccaatggaataggaaatttgataagccttcggcagctaatcataactacaaagcaatatactttaccagaaaaagagattgc |
110 |
Q |
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|||||||| ||| |||||||||||| |||||||||||||| |||||||| || ||| ||||| |||| ||||| || ||| ||||| ||||||||||| |
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| T |
29751623 |
taaagcttgaaaaattacccaatgggataggaaatttgatcagccttcgacaactacatataaccacaatgcaatctagttttccagacaaagagattgc |
29751722 |
T |
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| Q |
111 |
aaagttgactt |
121 |
Q |
| |
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|| ||||||| |
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| T |
29751723 |
caaattgactt |
29751733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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