View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_high_82 (Length: 240)
Name: NF19379_high_82
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_high_82 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 42852827 - 42852615
Alignment:
| Q |
17 |
ataaacactacatataatcacaatctgagtaataaatttaaaacgattaaatggttatatttgttagtttcaagaaaatatcaatctccaaatattacac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42852827 |
ataaacactacatataatcacaatctgagtaaaaaaattaaaacgattaaatggttatatttgttagtttcaagaaaatatcaatctccaaatattacac |
42852728 |
T |
|
| Q |
117 |
ctattgacaagttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaattccgtattaattgctgatccgcctaaaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42852727 |
ctattgacaagttaaacaaacaaatagtaacttacatcctatctcggataagtgtgcgtgctctaagaaattccgtattaattgctgatccgcctaaaga |
42852628 |
T |
|
| Q |
217 |
tggcatctgtgct |
229 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42852627 |
tggcatctgtgct |
42852615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 42854103 - 42854041
Alignment:
| Q |
127 |
gttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaattc |
189 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| | |||| || |||||||||||||||||| |
|
|
| T |
42854103 |
gttaaacaaacaaatggtaacttacatcctctcttgaataaatgagcgtgctctaagaaattc |
42854041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 42860383 - 42860281
Alignment:
| Q |
127 |
gttaaacaaacaaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaat------tccgtattaattgctgatccgcctaaagatggc |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| | |||| || | |||||||||||||| ||| | ||||| | ||||||||||||||||||| |
|
|
| T |
42860383 |
gttaaacaaacaaatagcaacttacatcctctcttgaataaatgagtgtgctctaagaaattcttggtccatgttaatcgttgatccgcctaaagatggc |
42860284 |
T |
|
| Q |
221 |
atc |
223 |
Q |
| |
|
||| |
|
|
| T |
42860283 |
atc |
42860281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 42848050 - 42848006
Alignment:
| Q |
79 |
gttagtttcaagaaaatatcaatctccaaatattacacctattga |
123 |
Q |
| |
|
||||||||||||||||||| ||| | ||| ||||||||||||||| |
|
|
| T |
42848050 |
gttagtttcaagaaaatatgaattttcaagtattacacctattga |
42848006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 21765157 - 21765105
Alignment:
| Q |
137 |
caaatagtaacttacatcctatctcggataagtgcgcgtgctctaagaaattc |
189 |
Q |
| |
|
||||||||||||||||||| |||||| | || ||||||||| ||||||||||| |
|
|
| T |
21765157 |
caaatagtaacttacatcccatctcgtacaactgcgcgtgccctaagaaattc |
21765105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University