View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_low_1 (Length: 668)

Name: NF19379_low_1
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_low_1
NF19379_low_1
[»] chr3 (2 HSPs)
chr3 (19-657)||(25601405-25602043)
chr3 (68-657)||(25596646-25597247)
[»] chr4 (18 HSPs)
chr4 (297-608)||(36643440-36643751)
chr4 (284-608)||(36636745-36637069)
chr4 (284-430)||(55967007-55967153)
chr4 (315-427)||(36613342-36613454)
chr4 (283-427)||(38863134-38863278)
chr4 (315-409)||(35974003-35974097)
chr4 (360-444)||(18364242-18364326)
chr4 (295-407)||(35968285-35968397)
chr4 (360-444)||(36598599-36598683)
chr4 (283-430)||(18083021-18083168)
chr4 (495-598)||(36613165-36613268)
chr4 (283-430)||(36617513-36617660)
chr4 (357-427)||(3978136-3978206)
chr4 (283-409)||(18359158-18359284)
chr4 (283-409)||(36603644-36603770)
chr4 (468-553)||(36668463-36668548)
chr4 (468-576)||(35968458-35968566)
chr4 (541-608)||(36909764-36909831)
[»] chr5 (4 HSPs)
chr5 (316-598)||(19674990-19675272)
chr5 (316-598)||(19658151-19658433)
chr5 (303-389)||(17667110-17667196)
chr5 (345-402)||(25064275-25064332)
[»] chr1 (2 HSPs)
chr1 (286-560)||(42602730-42603004)
chr1 (283-417)||(28928442-28928576)
[»] chr6 (6 HSPs)
chr6 (284-409)||(33844280-33844405)
chr6 (284-409)||(33840288-33840413)
chr6 (283-389)||(7140746-7140852)
chr6 (283-389)||(8680360-8680466)
chr6 (468-506)||(33840185-33840223)
chr6 (468-530)||(33844153-33844215)
[»] chr7 (4 HSPs)
chr7 (345-409)||(32413648-32413712)
chr7 (357-422)||(6844163-6844228)
chr7 (303-388)||(14677153-14677238)
chr7 (357-409)||(44501441-44501493)
[»] chr8 (2 HSPs)
chr8 (316-425)||(35335844-35335953)
chr8 (345-417)||(27701888-27701960)
[»] chr2 (2 HSPs)
chr2 (354-400)||(43864058-43864104)
chr2 (356-417)||(43875208-43875269)


Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 19 - 657
Target Start/End: Original strand, 25601405 - 25602043
Alignment:
Q  19 ctatgtgctaagaaactggtgcgccaaggtatttcacattccaattatttcctttacccctaaatttttaattattattctacttcatacttaaaaatac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601405 ctatgtgctaagaaactggtgcgccaaggtatttcacattccaattatttcctttacccctaaatttttaattattattctacttcatacttaaaaatac 25601504  T
Q  119 attctagattttaattaggattggaatcttgctctataatcaatcctattgcacaatataattacattgtttttgttctgattcagtgcttaacaaagtc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601505 attctagattttaattaggattggaatcttgctctataatcaatcttattgcacaatataattacattgtttttgttctgattcagtgcttaacaaagtc 25601604  T
Q  219 gaaacaagggacatgtctgattttataaattttttgaataaagcaatacactctgagaacgagcatgaagacagattgagtgatttacccgactgtgttc 318  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601605 gaaacaagggacatgtctgattttataaaaaatttgaataaagcaatacactctgagaacgagcatgaagacagattgagtgatttacccgactgtgttc 25601704  T
Q  319 tccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttat 418  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601705 tccttcatattttgtcattttgtaataccaaacatgctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttat 25601804  T
Q  419 attgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgat 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601805 attgcattcctctgaatttcccactataaagagttttgcggcattcgtctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgat 25601904  T
Q  519 cttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgtta 618  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601905 cttgactgtgatggtaacatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgtta 25602004  T
Q  619 ggggtgataatgatctcattctccaatgtgtttcttcat 657  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  25602005 ggggtgatagtgatctcattctccaatgtgtttcttcat 25602043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 68 - 657
Target Start/End: Original strand, 25596646 - 25597247
Alignment:
Q  68 tcctttacccctaaatttttaattattattctacttcatacttaaaaatacattctagatt--------ttaattaggattggaatcttgctctataatc 159  Q
    |||||| ||| || ||||||||||||||| ||||||||||||| ||||||||||| |||||        ||||||||||| ||||  ||||| |||||      
T  25596646 tcctttccccttatatttttaattattatcctacttcatacttcaaaatacattcaagattaacagattttaattaggatcggaagattgctttataa-- 25596743  T
Q  160 aatcctattgcacaatataattacattgtttttgttctgattcagtgcttaacaaagtcgaaacaagggacatgtctgattttataaattttttgaataa 259  Q
     ||  ||||||| |||||||||  |||||||||  || | |||| ||| ||||||||| |||||||| ||| || ||||||| || ||     || | ||    
T  25596744 -at--tattgcataatataattcaattgttttttatcagtttcaatgcctaacaaagtggaaacaagtgacgtgcctgatttcattaaaaaaatggagaa 25596840  T
Q  260 agcaatacactctgagaacgagcatgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgtt 359  Q
    ||||||||||| ||| || ||| |||||||||||||||| ||||||||||||  |||||| ||||| |||||||||||||  ||||||||  ||||||||    
T  25596841 agcaatacactgtgaaaatgagaatgaagacagattgagcgatttacccgacaatgttcttcttcacattttgtcatttttgaataccaagtatgccgtt 25596940  T
Q  360 caaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcgg 459  Q
    ||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||||||||| |  |||||| ||||||||  ||| |||| |      
T  25596941 caaacttgcattttgtctacgagatggaagaatctttggaaacatattcccacccttatattgcattgccttgaattccccactatggagaattttacct 25597040  T
Q  460 cattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttga---------ctgtgatggtaatatccagcctcgact 550  Q
    ||| | | ||||||||||| ||||||||||||||| || ||||| || ||||||||||||||||         || |||||||||||||| | ||  |||    
T  25597041 catccgtatctaagattttaactcttcgtgatagcacaacttcactgcatgctcttgatcttgaccgtacaccctatgatggtaatatcccgtctgaact 25597140  T
Q  551 cctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgataatgatctcattctccaatgtgtt 650  Q
    |||||||||||| ||| | |||||||| |||||||||||||| || |  ||||||||| ||| |||||||||||||| || ||||||||| || ||||||    
T  25597141 cctcaaaaagatattagactatgtttcttctcataattcccaccttcgggaattaggaatctctgttaggggtgatagtggtctcattcttcattgtgtt 25597240  T
Q  651 tcttcat 657  Q
    |||||||    
T  25597241 tcttcat 25597247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 297 - 608
Target Start/End: Complemental strand, 36643751 - 36643440
Alignment:
Q  297 agtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatcttt 396  Q
    ||||| |||||||| |||||| ||||||| ||||| |||||||   |  |||||||||| |||||||| ||  |||||||||||||||||||| ||||||    
T  36643751 agtgacttacccgagtgtgttatccttcacattttatcatttttggactccaaacatgctgttcaaacctgtgttttgtccacaagatggaagcatcttt 36643652  T
Q  397 ggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctc 496  Q
    ||  ||||||||| ||||||||||| ||||||||  | ||| | ||| | ||||  |||||   |||| | ||||| ||||||||||||||  |||||||    
T  36643651 gggcacgtattcctacccttatattacattcctcaaacttttcaactgtcaagaaatttgccatattcgtgtctaacattttgactcttcgcaatagctc 36643552  T
Q  497 agcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactc 596  Q
    | ||||  || | |||||  |||||||  ||  |||| ||||  | |||| |||||| |||||||||||||| ||| ||| ||| |||||| |||| |||    
T  36643551 aacttctctgcaagctctcaatcttgatcgtcgtggtgatattgaacctcaactccttaaaaagattttaaattatatttgctcccataatacccacctc 36643452  T
Q  597 cacgaattagga 608  Q
    ||||||||||||    
T  36643451 cacgaattagga 36643440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 284 - 608
Target Start/End: Complemental strand, 36637069 - 36636745
Alignment:
Q  284 tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaaga 383  Q
    |||||||||  ||||||| ||||||||| || |  ||||||| |||||||||||||  |||||||||||||  ||   ||||||  ||||||| |  |||    
T  36637069 tgaagacaggctgagtgacttacccgacggtataatccttcacattttgtcatttttgaataccaaacatgttgtcagaacttgtgttttgtctaagaga 36636970  T
Q  384 tggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactc 483  Q
    ||||   |||| |||||||||||||| || ||||| ||| || | ||   |||| ||||| | |||   |||||    ||  | ||||| || |||||||    
T  36636969 tggagacatctctggaaacgtattccaactcttatgttgtatgcatcaagattttccactgttaagcaatttgccatgtttgtgtctaacatattgactc 36636870  T
Q  484 ttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctca 583  Q
    ||||||||| |||| || || || | ||||||||||||||| || ||||||| ||  |||||| |||||| |||||||||||||| ||||||||||| ||    
T  36636869 ttcgtgatacctcaactgcactgcacgctcttgatcttgaccgtcatggtaacattgagcctcaactccttaaaaagattttaaactatgtttcctccca 36636770  T
Q  584 taattcccaactccacgaattagga 608  Q
    |||| |||| ||||| || ||||||    
T  36636769 taatacccacctccaggatttagga 36636745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 284 - 430
Target Start/End: Complemental strand, 55967153 - 55967007
Alignment:
Q  284 tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaaga 383  Q
    |||||||||||  ||||| ||||||||| ||||||||||||| ||||| |||||||  || ||||| |||| | ||  ||||||  ||||||||||||||    
T  55967153 tgaagacagataaagtgacttacccgacagtgttctccttcacattttatcatttttgaagaccaagcatgtcattagaacttgtgttttgtccacaaga 55967054  T
Q  384 tggaagtatctttggaaacgtattcccacccttatattgcattcctc 430  Q
    ||||  ||||| ||||||| | ||||  ||||||| |||||||||||    
T  55967053 tggagatatctctggaaacatgttccagcccttattttgcattcctc 55967007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 36613454 - 36613342
Alignment:
Q  315 gttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccc 414  Q
    ||||||||||| |||||||||||||   |  ||| | |||||| |||||||||  ||||||||||||| ||||||||||||||||||| |||||| || |    
T  36613454 gttctccttcacattttgtcatttttggacgccacatatgccgatcaaacttgtgttttgtccacaaggtggaagtatctttggaaacttattccaactc 36613355  T
Q  415 ttatattgcattc 427  Q
    |||  ||||||||    
T  36613354 ttaatttgcattc 36613342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 283 - 427
Target Start/End: Complemental strand, 38863278 - 38863134
Alignment:
Q  283 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 382  Q
    ||||||||||   |||||| ||||||||| || |||||||| | ||||||||||  |  ||||||||||||||| ||| ||||||  |||||||||  ||    
T  38863278 atgaagacaggccgagtgacttacccgacggtattctcctttacattttgtcatcgttgaataccaaacatgccattcgaacttgtgttttgtccaagag 38863179  T
Q  383 atggaagtatctttggaaacgtattcccacccttatattgcattc 427  Q
    ||||||  |||| | ||||||||||||  | ||||||||||||||    
T  38863178 atggaaacatctctcgaaacgtattccatctcttatattgcattc 38863134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 315 - 409
Target Start/End: Original strand, 35974003 - 35974097
Alignment:
Q  315 gttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 409  Q
    ||||||||||| ||||||||||| |   |||| ||||| |||||||||| ||| |||||||||||||||||||   |||| ||||||||||||||    
T  35974003 gttctccttcacattttgtcattgttcgatacaaaacaggccgttcaaagttgtattttgtccacaagatggagacatctctggaaacgtattcc 35974097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 360 - 444
Target Start/End: Original strand, 18364242 - 18364326
Alignment:
Q  360 caaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccacta 444  Q
    ||||||| ||||||||| |||||||||||  ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||    
T  18364242 caaacttccattttgtctacaagatggaaacatctttggaaacgcattccaactcttatgttgcattcctcagacttttccacta 18364326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 35968285 - 35968397
Alignment:
Q  295 tgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatct 394  Q
    ||||||| ||| ||||| | ||||||||||| ||||||||||| |   |||| ||||| | ||||||||||||| ||||||||| ||||||| |  ||||    
T  35968285 tgagtgagttagccgacggagttctccttcacattttgtcattattggatacaaaacaggtcgttcaaacttgcgttttgtccaaaagatgggaacatct 35968384  T
Q  395 ttggaaacgtatt 407  Q
     ||||||||||||    
T  35968385 ctggaaacgtatt 35968397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 36598683 - 36598599
Alignment:
Q  360 caaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccacta 444  Q
    ||||||| ||||||||| |||||||||||  ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||    
T  36598683 caaacttccattttgtctacaagatggaaacatctttggaaacgcattccaactcttatgttgcattcctcagacttttccacta 36598599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 430
Target Start/End: Original strand, 18083021 - 18083168
Alignment:
Q  283 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 382  Q
    ||||||| || |||||||| |||||  || ||||| |||||  ||||||||||||||  || |||||| |||  |||| ||||||| ||||||| | |||    
T  18083021 atgaagataggttgagtgacttacctaacagtgttatcctttgtattttgtcatttttaaacaccaaagatggtgttcgaacttgcgttttgtctagaag 18083120  T
Q  383 atggaagtatctttggaaacgtattcccacccttatattgcattcctc 430  Q
    ||||||  || | ||||||| |||||| || ||| ||||| |||||||    
T  18083121 atggaaagatatatggaaacatattcctactcttgtattggattcctc 18083168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 598
Target Start/End: Complemental strand, 36613268 - 36613165
Alignment:
Q  495 tcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaac 594  Q
    |||||| ||||| |||| |||||| ||||||||   ||||||||  |||||||| |||| ||||||||||| || |||||||||||  ||||| |||| |    
T  36613268 tcagctgcattggatgcccttgattttgactgtagaggtaatattgagcctcgaatccttaaaaagattttgaattatgtttcctcagataatacccacc 36613169  T
Q  595 tcca 598  Q
    ||||    
T  36613168 tcca 36613165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 430
Target Start/End: Complemental strand, 36617660 - 36617513
Alignment:
Q  283 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 382  Q
    ||||||| || |||||||| |||||  || ||||| |||||  ||||||||||||||  || |||||| |||  |||| ||||||| ||||||| | |||    
T  36617660 atgaagataggttgagtgacttacctaacagtgttatcctttgtattttgtcatttttaaacaccaaagatggtgttcgaacttgcgttttgtctagaag 36617561  T
Q  383 atggaagtatctttggaaacgtattcccacccttatattgcattcctc 430  Q
    ||||||  || | ||||||| |||||| || ||| ||||| |||||||    
T  36617560 atggaaagatatatggaaacatattcctactcttgtattggattcctc 36617513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 427
Target Start/End: Original strand, 3978136 - 3978206
Alignment:
Q  357 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattc 427  Q
    |||||||||||| |||| ||||||||||  ||| |||||||||||||| |||| || |||| |||||||||    
T  3978136 gttcaaacttgcgttttatccacaagatataaggatctttggaaacgtcttcctactcttacattgcattc 3978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 409
Target Start/End: Original strand, 18359158 - 18359284
Alignment:
Q  283 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 382  Q
    ||||||||||  ||||||| || || || |||||||| ||||| ||||||||| | |   || ||||||||   |||| |||| |||||||||||| |||    
T  18359158 atgaagacaggctgagtgacttgcctgattgtgttcttcttcacattttgtcaatgttggattccaaacatcgagttcgaactggcattttgtccaaaag 18359257  T
Q  383 atggaagtatctttggaaacgtattcc 409  Q
     |||||| |||||||||||| ||||||    
T  18359258 gtggaagcatctttggaaacatattcc 18359284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 409
Target Start/End: Complemental strand, 36603770 - 36603644
Alignment:
Q  283 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 382  Q
    ||||||||||  ||||||| || || || |||||||| ||||| ||||||||| | |   || ||||||||   |||| |||| |||||||||||| |||    
T  36603770 atgaagacaggctgagtgacttgcctgattgtgttcttcttcacattttgtcaatgttggattccaaacatcgagttcgaactggcattttgtccaaaag 36603671  T
Q  383 atggaagtatctttggaaacgtattcc 409  Q
     |||||| |||||||||||| ||||||    
T  36603670 gtggaagcatctttggaaacatattcc 36603644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 553
Target Start/End: Complemental strand, 36668548 - 36668463
Alignment:
Q  468 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcct 553  Q
    |||||||||||||||||||||||||||||| || |||||   | ||||||| ||||| || |||||||| |  | |||||||||||    
T  36668548 tctaagattttgactcttcgtgatagctcaactgcattgcgcgttcttgatgttgaccgtaatggtaattttgaacctcgactcct 36668463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 576
Target Start/End: Original strand, 35968458 - 35968566
Alignment:
Q  468 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 567  Q
    ||||||||||||||||||||||||| ||||  | || || | ||||||||| ||||| || ||||||||||  || ||| ||||||  ||||| |||||     
T  35968458 tctaagattttgactcttcgtgatacctcaattccactgcaagctcttgatattgaccgtcatggtaatattgagtctcaactccttgaaaaggttttag 35968557  T
Q  568 agtatgttt 576  Q
    | |||||||    
T  35968558 actatgttt 35968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 608
Target Start/End: Original strand, 36909764 - 36909831
Alignment:
Q  541 agcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga 608  Q
    |||||| |||||| |||||||||||||| |||||| | || |||||| |||| ||||| |||||||||    
T  36909764 agcctcaactccttaaaaagattttaaactatgttacttcccataatacccacctccatgaattagga 36909831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 316 - 598
Target Start/End: Complemental strand, 19675272 - 19674990
Alignment:
Q  316 ttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccct 415  Q
    |||||||||| |||||||||||||   |  | ||| ||||||||||||||||  |||||||||| ||||||| | |||| ||||||| |||||| || ||    
T  19675272 ttctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactct 19675173  T
Q  416 tatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctctt 515  Q
    ||| |||||||| ||  ||||| ||||| | |||   ||| ||  |||| |  |||||||||||||||||||||||| ||||  ||||||| | || |||    
T  19675172 tattttgcattcttccaaattttccactctgaagcaattttcgaaattcgtgcctaagattttgactcttcgtgatacctcaatttcattgcacgccctt 19675073  T
Q  516 gatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactcca 598  Q
    ||||||||| || ||||| ||||  |||||||| |||| |||||||||||| | ||||||| ||| |||||| |||| |||||    
T  19675072 gatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttagattatgtttgctcacataatacccacctcca 19674990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 316 - 598
Target Start/End: Complemental strand, 19658433 - 19658151
Alignment:
Q  316 ttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccct 415  Q
    |||||||||| |||||||||||||   |  | ||| ||||||||||||||||  |||||||||| ||||||| | |||| ||||||| |||||| || ||    
T  19658433 ttctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactct 19658334  T
Q  416 tatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctctt 515  Q
    ||| |||||||| ||  ||||| ||||| | |||   ||| |   |||| |  |||||||||||||||||||||||| ||||  ||||||| | || |||    
T  19658333 tattttgcattcttccaaattttccactctgaagcaattttccaaattcgtgcctaagattttgactcttcgtgatacctcaatttcattgcacgccctt 19658234  T
Q  516 gatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactcca 598  Q
    ||||||||| || ||||| ||||  |||||||| |||| |||||||||||| | ||||||| ||| |||||| |||| |||||    
T  19658233 gatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttagattatgtttgctcacataatacccacctcca 19658151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 17667196 - 17667110
Alignment:
Q  303 ttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaag 389  Q
    ||||||||| ||||| |||||||||||||||||||||  || |||||| | |  |||| ||||||| ||||||| ||||||||||||    
T  17667196 ttacccgacagtgttatccttcatattttgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtctacaagatggaag 17667110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 25064275 - 25064332
Alignment:
Q  345 accaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaac 402  Q
    ||||||||||| || ||||| ||||| |||||| ||||||||||  ||||||||||||    
T  25064275 accaaacatgcagtccaaacatgcatattgtccccaagatggaacaatctttggaaac 25064332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 286 - 560
Target Start/End: Complemental strand, 42603004 - 42602730
Alignment:
Q  286 aagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatg 385  Q
    |||||||  ||||||| ||||| |||||| || ||||||| ||||||||||||  |||  |||||||  |||||||||||||||| ||||||| ||||||    
T  42603004 aagacaggctgagtgacttacctgactgtcttatccttcacattttgtcatttcttaactccaaacacaccgttcaaacttgcatcttgtccaaaagatg 42602905  T
Q  386 gaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactctt 485  Q
    ||||  | | |||||||||||||| || ||||||||| |||||||  | ||||||||| | |||  |||| |   |||  | ||||||||||||||||||    
T  42602904 gaagcttatgtggaaacgtattcctactcttatattggattcctcaaactttcccactgtgaagcatttttccatatttgtgtctaagattttgactctt 42602805  T
Q  486 cgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaag 560  Q
    ||||||| |||| || || || |||||||||||||| || || |||||| |||  |||| | |||||| ||||||    
T  42602804 cgtgatacctcaactgcactgcatgctcttgatcttcaccgtcatggtagtattgagccgcaactccttaaaaag 42602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 417
Target Start/End: Complemental strand, 28928576 - 28928442
Alignment:
Q  283 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 382  Q
    |||||||||  || |||||||| || ||||||||||| ||||| || || || ||||  ||  ||||| | || ||||||||||||||  | |||||  |    
T  28928576 atgaagacatgttcagtgatttcccggactgtgttctacttcacatattatcttttttaaaagccaaagaagctgttcaaacttgcatactctccactcg 28928477  T
Q  383 atggaagtatctttggaaacgtattcccaccctta 417  Q
    ||||||| |||| ||||| ||| ||||||||||||    
T  28928476 atggaagaatctctggaagcgtcttcccaccctta 28928442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 33844405 - 33844280
Alignment:
Q  284 tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaaga 383  Q
    |||||| ||| | ||||| |||||||||||  ||||  || | |||||||||||||  || ||| || | |||||||||||||||||||||||||| |||    
T  33844405 tgaagatagactaagtgacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccaga 33844306  T
Q  384 tggaagtatctttggaaacgtattcc 409  Q
    |||||  |||| ||||||||||||||    
T  33844305 tggaaacatctctggaaacgtattcc 33844280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 33840413 - 33840288
Alignment:
Q  284 tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaaga 383  Q
    |||||||||| | ||||| |||||||||||  ||||  || | |||||||||||||  |  | | || | || |||| |||||||||||||||||| |||    
T  33840413 tgaagacagactaagtgacttacccgactgccttcttgtttacattttgtcatttttgagaatcgaatacgctgttcgaacttgcattttgtccaccaga 33840314  T
Q  384 tggaagtatctttggaaacgtattcc 409  Q
    |||||  |||||||||||||||||||    
T  33840313 tggaaacatctttggaaacgtattcc 33840288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 389
Target Start/End: Complemental strand, 7140852 - 7140746
Alignment:
Q  283 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 382  Q
    |||||||||  || ||||||||||||||||||||| | ||||| ||  | || ||||  ||||| ||| | || ||||||||||| |||||||||| |||    
T  7140852 atgaagacaagttaagtgatttacccgactgtgttttacttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaag 7140753  T
Q  383 atggaag 389  Q
    |||||||    
T  7140752 atggaag 7140746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 389
Target Start/End: Complemental strand, 8680466 - 8680360
Alignment:
Q  283 atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaag 382  Q
    |||||||||  || ||||||||| ||||||||||| | ||||| ||  | || ||||  ||||| ||| | || ||||||||||| |||||||||| |||    
T  8680466 atgaagacaagttaagtgatttagccgactgtgttttacttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaag 8680367  T
Q  383 atggaag 389  Q
    |||||||    
T  8680366 atggaag 8680360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 506
Target Start/End: Complemental strand, 33840223 - 33840185
Alignment:
Q  468 tctaagattttgactcttcgtgatagctcagcttcattg 506  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  33840223 tctaagattttgactcttcgtgataactcagctgcattg 33840185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 530
Target Start/End: Complemental strand, 33844215 - 33844153
Alignment:
Q  468 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgat 530  Q
    ||||||||||||||||||||||||| ||||||| || || ||  ||||||| |||| ||||||    
T  33844215 tctaagattttgactcttcgtgataactcagctgcactgcatattcttgattttgagtgtgat 33844153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 32413648 - 32413712
Alignment:
Q  345 accaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 409  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||    
T  32413648 accaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 422
Target Start/End: Original strand, 6844163 - 6844228
Alignment:
Q  357 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattg 422  Q
    ||||||||||||||| | |||| |||||||||  |||||||||||| | ||||||| |||||||||    
T  6844163 gttcaaacttgcattctatccaaaagatggaacaatctttggaaacatcttcccactcttatattg 6844228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 14677153 - 14677238
Alignment:
Q  303 ttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaa 388  Q
    |||||| || ||||| |||||||||||||||||||||  || |||||| | |  |||| ||||||| ||||||| |||||||||||    
T  14677153 ttacccaacagtgttatccttcatattttgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtctacaagatggaa 14677238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 44501493 - 44501441
Alignment:
Q  357 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 409  Q
    ||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||    
T  44501493 gttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 44501441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 425
Target Start/End: Original strand, 35335844 - 35335953
Alignment:
Q  316 ttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccct 415  Q
    |||| ||||| ||||||||||| |   || ||||||| |  |||||||||||| ||||||||| |||||||||  |||| |||||||||||||| || ||    
T  35335844 ttctacttcacattttgtcattattacattccaaacaagttgttcaaacttgcgttttgtccaaaagatggaaacatctatggaaacgtattccaacact 35335943  T
Q  416 tatattgcat 425  Q
    ||||||||||    
T  35335944 tatattgcat 35335953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 27701960 - 27701888
Alignment:
Q  345 accaaacatgccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccctta 417  Q
    |||||||||||||||||||||  |||| | ||||||||||||||  |||| ||||||||| |||| |||||||    
T  27701960 accaaacatgccgttcaaactaccattctttccacaagatggaacaatctctggaaacgtcttccaaccctta 27701888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 43864104 - 43864058
Alignment:
Q  354 gccgttcaaacttgcattttgtccacaagatggaagtatctttggaa 400  Q
    ||||||||||||||||||||||||| ||||||||   ||||||||||    
T  43864104 gccgttcaaacttgcattttgtccaaaagatggatcaatctttggaa 43864058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 43875269 - 43875208
Alignment:
Q  356 cgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccctta 417  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||  || ||||||| ||||    
T  43875269 cgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactctta 43875208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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