View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_10 (Length: 548)
Name: NF19379_low_10
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 48592086 - 48591668
Alignment:
| Q |
9 |
gagatgaagatgtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48592086 |
gagatgaagatgtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcaacttcttgtttctctttaagtaagagagaagc |
48591987 |
T |
|
| Q |
109 |
tgaaaaatgaaaagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaatgcacaattgagaagtgttgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48591986 |
tgaaaaatgaaaagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcactttgaatgcacaattgagaagtgttgt |
48591887 |
T |
|
| Q |
209 |
gaatcaaacttatatgcatggcgttatattttggataactgttaataacttttcaaagtataccctaccgnnnnnnncgatagtgaatcgtataacaaaa |
308 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
48591886 |
gattcaaacttatatgcatggccttatattttggataactgttaataacttttcaaagtatgccctaccg-ttttttcgatagtgaatcgtataacaaaa |
48591788 |
T |
|
| Q |
309 |
atatacactttggcaccaagtaaagaaatgataactcttatttacctatcaataaagtgagtagagttat--acgtaatttgacaccaatcaaaattatt |
406 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
48591787 |
atatacactttggcaccaagtaaagaaatgacaactcttatttacctatcaataaagtgagtagagttatacacgtgatttgacaccaatcaaaattatt |
48591688 |
T |
|
| Q |
407 |
tatttattttctactattta |
426 |
Q |
| |
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|||||||||||||||||||| |
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| T |
48591687 |
tatttattttctactattta |
48591668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 48601781 - 48601363
Alignment:
| Q |
9 |
gagatgaagatgtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48601781 |
gagatgaagatgtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcaacttcttgtttctctttaagtaagagagaagc |
48601682 |
T |
|
| Q |
109 |
tgaaaaatgaaaagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaatgcacaattgagaagtgttgt |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48601681 |
tgaaaaatgaaaagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcactttgaatgcacaattgagaagtgttgt |
48601582 |
T |
|
| Q |
209 |
gaatcaaacttatatgcatggcgttatattttggataactgttaataacttttcaaagtataccctaccgnnnnnnncgatagtgaatcgtataacaaaa |
308 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
48601581 |
gattcaaacttatatgcatggccttatattttggataactgttaataacttttcaaagtatgccctaccg-ttttttcgatagtgaatcgtataacaaaa |
48601483 |
T |
|
| Q |
309 |
atatacactttggcaccaagtaaagaaatgataactcttatttacctatcaataaagtgagtagagttat--acgtaatttgacaccaatcaaaattatt |
406 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
48601482 |
atatacactttggcaccaagtaaagaaatgacaactcttatttacctatcaataaagtgagtagagttatacacgtgatttgacaccaatcaaaattatt |
48601383 |
T |
|
| Q |
407 |
tatttattttctactattta |
426 |
Q |
| |
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|||||||||||||||||||| |
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| T |
48601382 |
tatttattttctactattta |
48601363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 182 - 548
Target Start/End: Complemental strand, 48597484 - 48597133
Alignment:
| Q |
182 |
tttgaatgcacaattgagaagtgttgtgaatcaaacttatatgcatggcgttatattttggataactgttaataacttttcaaagtataccctaccgnnn |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| |
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| T |
48597484 |
tttgaatgcacaattgagaagtgttgtgaatcaaacttatatgcatggcgttatattttggataaccgttaataaattttcaaagtatgccctaccgttt |
48597385 |
T |
|
| Q |
282 |
nnnncgatagtgaatcgtataacaaaaatatacactttggcaccaagtaaagaaatgataactcttatttacctatcaataaagtgagtagagttatac- |
380 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |
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| T |
48597384 |
ttt-cgatagtgaattgtataacaaaaatatacactttggcaccaagtaaagaaatgacatctctta---------caataaagtgagtagagttataca |
48597295 |
T |
|
| Q |
381 |
-gtaatttgacaccaatcaaaattatttatttattttctactatttatgttatagatatgacatacatggtaaaagataaataaataactttgattacat |
479 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |
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| T |
48597294 |
cgtgatttgacaccaatcaaatttatttatttattttctactatttatgttatagatatgacatacaagataaaagataaataaataattttgattacat |
48597195 |
T |
|
| Q |
480 |
tggtaagtggtaacactaccaaccttttgttgcaattgccatctaaaaaatatatagtatttagttcca |
548 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48597194 |
tg-------gtaacactaccaaccttttgttgcaattgccatctaaataatatatagtatttagttcca |
48597133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 26532768 - 26532813
Alignment:
| Q |
386 |
ttgacaccaatcaaaattatttatttattttctactatttatgtta |
431 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||| |||||||| |
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| T |
26532768 |
ttgacaccaatcaaaattatttatttgtcttctactacttatgtta |
26532813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 15882735 - 15882690
Alignment:
| Q |
386 |
ttgacaccaatcaaaattatttatttattttctactatttatgtta |
431 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||| ||||||||||| |
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| T |
15882735 |
ttgacaccaatcaaaatcatttatttgtcttctattatttatgtta |
15882690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 49197488 - 49197444
Alignment:
| Q |
389 |
acaccaatcaaaattatttatttattttctactatttatgttata |
433 |
Q |
| |
|
|||||||||||||| || ||||||| ||| ||||||||||||||| |
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|
| T |
49197488 |
acaccaatcaaaatcatatatttatcttccactatttatgttata |
49197444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 23232246 - 23232421
Alignment:
| Q |
9 |
gagatgaagatgtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagc |
108 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| || || |||||||||||||| ||| |||| ||| |
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| T |
23232246 |
gagatgaagatgtccaattattggtattgttggtggacttggagg--gagg-ggtaaatgtggttgtgatttcttgtttctcttaaagacggagaaaagt |
23232342 |
T |
|
| Q |
109 |
tgaaaaatgaaaagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaa |
187 |
Q |
| |
|
| | || |||||||| ||||||| ||||||||||||| |||||||||| |||||||| ||| |||||| | |||||| |
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|
| T |
23232343 |
gggagaaggaaaagaagaaggagcacaatcatagctaataagaaggaatgagaaatcatcttgttttattagctttgaa |
23232421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 23224913 - 23224964
Alignment:
| Q |
9 |
gagatgaagatgtccaattattggtattgctggtggacttggagggtgaggt |
60 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
23224913 |
gagatgaagatgaccaattattggtattgctagtggacttggagggtaaggt |
23224964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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