View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_15 (Length: 493)
Name: NF19379_low_15
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 4563153 - 4563611
Alignment:
| Q |
17 |
gatatgaataattgaatacctaaagaagatgcattctgaatgtatttagtagtgcgttgtcctgtgatgaaacggtggcgatcaaagagatgaaaaaatc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4563153 |
gatatgaataattgaatacctaaagaagatgcattctgaatgtatttagtagtgcgttgtcctgtgatgaaacggtggcgatcaaagagctgaaaaaatc |
4563252 |
T |
|
| Q |
117 |
cagtgatgcaaccaatctgcttctgcaattctttcttttcatctttcatagatttcaagccnnnnnnngacatttttatttcccttcaaacttcaactct |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4563253 |
cagtgatgcaaccaatttgcttctgcaattctttcttttcatctttcatagatttcaagcctttttttgacatttttatttcccttcaaacttcaactct |
4563352 |
T |
|
| Q |
217 |
gttttgtccacagtttcaaacaatcatgcccctattgaatgtaaaagaannnnnnnnnnnnnnnnnnaattcaattgaaatatagcaacaatttcatggt |
316 |
Q |
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| T |
4563353 |
gttttgtctacagtttcaaacaatcatgcccctaatgaatgtaaaagaaaaaatctttgaaatttttaattcaattgatatatagcaacaatttcatggt |
4563452 |
T |
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| Q |
317 |
tttaaattgtagtcgcggctacagtcacactaaatatctttatatttaagaaaaatgcggcctatgcatttgaaattgcaattgtgatgccgatgcgatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4563453 |
tttaaattgtagtcgcggctacagtcacactaaatatctttatatttaagaaaaatgc-gccgatgcatttgaaattgcaattgtgatgccgatgcgatg |
4563551 |
T |
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| Q |
417 |
accttaaaatcttcttgattatttcgaccatagtagtaaattcactataatttgaatatg |
476 |
Q |
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| T |
4563552 |
accttaaaatcttcttgattatttcgaccatagtagtaaattgactataatttgaatatg |
4563611 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 5027341 - 5027420
Alignment:
| Q |
95 |
cgatcaaagagatgaaaaaatccagtgatgcaaccaatctgcttctgcaattctttcttttcatctttcatagatttcaa |
174 |
Q |
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|||||||| || |||||||||||| | ||||| ||||| |||||||||||||||| |||||||||||||| ||| |||| |
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| T |
5027341 |
cgatcaaatagctgaaaaaatccactaatgcatccaatttgcttctgcaattcttgattttcatctttcattgatgtcaa |
5027420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 8011580 - 8011628
Alignment:
| Q |
95 |
cgatcaaagagatgaaaaaatccagtgatgcaaccaatctgcttctgca |
143 |
Q |
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| T |
8011580 |
cgatcaaagagctgaaaaattccagtcatacaaccaatctgcttctgca |
8011628 |
T |
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