View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_16 (Length: 484)
Name: NF19379_low_16
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 9621292 - 9620847
Alignment:
| Q |
19 |
acatttcatccatgcatgtcttcacaaataaggataannnnnnn-atggggagtgatcataatatattcttaacaattttagtgctcattttgttattga |
117 |
Q |
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| T |
9621292 |
acatttcatccatgcatgtcttcacaaataaggagaattttttttatggggagtgatcataatatattcttaacaattttagtgatctttttgttattga |
9621193 |
T |
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| Q |
118 |
tgttcactccactcataaaaaagaaaa---tatctattttaatgactatcatnnnnnnnnnnctaggttagttctgtcattggtcgaactgacgaaatct |
214 |
Q |
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| T |
9621192 |
tattcattccactcataaaaaaaaaaaaaatatctatttggatgactatcataaaaa-----ctaggttagctatgtcattgcccgaaccgacaaaatct |
9621098 |
T |
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| Q |
215 |
ccaaatcataattcaatgtaaatcaccttaaaacgctcgaactaagtcgaagctatgatgattgattcaatactcaactagtagataacttatatgttag |
314 |
Q |
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| T |
9621097 |
ccaaatcataattcaatgtaaaccgtcttaaatcgctcaaaccgagtcgaaactatgatggttgattcaaggttcaactagttgataacttatatgttag |
9620998 |
T |
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| Q |
315 |
gtcttttcactttcttcatttgataacttattattaaggaccctttacactttcatttcccccatattctccttcacaataattgtaaccctagctataa |
414 |
Q |
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| T |
9620997 |
gtcttttcactttcttcatttgataacttattattaaggaccctttacactttcatttcccctatattctccttcacaataattgtaaccctagctataa |
9620898 |
T |
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| Q |
415 |
tgacttgatcgatcctaataagcaagaagtgagtactccaagagtagtgcg |
465 |
Q |
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| T |
9620897 |
tgacttgatcgatcctaataagcaagaagtgagtactccaagagtagtgcg |
9620847 |
T |
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