View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_17 (Length: 479)
Name: NF19379_low_17
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 469
Target Start/End: Complemental strand, 53112537 - 53112087
Alignment:
| Q |
20 |
ggtggagccttcaaagtccaggttatggctgatgtgaggtatgttacgttgctattttgatatatagtaacagaccaaaaagtccattctgaaaatgttt |
119 |
Q |
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| T |
53112537 |
ggtggagccttcaaagtccaggttatggctgatgtgaggtatgttacgttgctattttgatatatagtaacagaccaaaaagtccattctgaaaatgttt |
53112438 |
T |
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| Q |
120 |
ttgaatagaaacagactattgtcaccgatacgataatcgttcttatgttctcannnnnnnagtgtagcctatatacctnnnnnnn-cagtgtagcttgtc |
218 |
Q |
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| T |
53112437 |
ttgaatagaaacagactattgtcaccgatacgataatcgttcttatgttctcatttttttagtgtagcctatatacctaaaaaaaacagtgtagcttgtc |
53112338 |
T |
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| Q |
219 |
accccctgtatatgatctggattcagtttctgattgaattgttatttcgagtggctgatgcaatatatcagaaatttattgatcaagcggcttggacaag |
318 |
Q |
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| T |
53112337 |
accccctgtatatgatctggattcagtttctgattgaattgttatttcgagtggctgatgcaatatatcagaaatttattgatcaagcggcttggacaag |
53112238 |
T |
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| Q |
319 |
aaaattaaagttgtcacccctagttgattgaattgattgaattactattgttcattcaatggttattattttatgattatgttcattagataggaaaaga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53112237 |
aaaattaaagttgtcacccctagttgattgaattgattgaattactattgttcattcaatggttattattttatgattctgttcattagataggaaaaga |
53112138 |
T |
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| Q |
419 |
agaccaatgctttccaacctccctttcctttagagaaaagtctggcctatg |
469 |
Q |
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| T |
53112137 |
agaccaatgctttccaacctccctttcctttagagaaaagtctggcctatg |
53112087 |
T |
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