View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_18 (Length: 470)
Name: NF19379_low_18
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 1961852 - 1961593
Alignment:
| Q |
1 |
cacagagccaagactagaactcattgcaaagcaaggatttcagatgtattagagaatgaaaagtttgtcatccatgaatttgttgatgaccttaaccact |
100 |
Q |
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| T |
1961852 |
cacagagccaagactagaactcattgcaaagcaaggatttcagatgtattagagaatgaaaagtttgtcatccatgaatttgttgattaccttaaccact |
1961753 |
T |
|
| Q |
101 |
taatactctacaacttttagagacaacattgtcattttgctgtaattttgggatgcatgatagcagtgtaatacctatttaaccgttatcatcaagttgc |
200 |
Q |
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| T |
1961752 |
taatactctacaacttttagagacaacattgtcattttgctgtaattttgggatgcatgatagcagtgtaatacctatttaaccgttatcatcaagttgc |
1961653 |
T |
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| Q |
201 |
tttgtggattttccaatgtagctagcaatggtattgattataacaattaaatgtgcatct |
260 |
Q |
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| T |
1961652 |
tttgtggattttccaatgtagctagcaatggtattgattataacaattaaatgtgcatct |
1961593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 256 - 470
Target Start/End: Complemental strand, 1961221 - 1961005
Alignment:
| Q |
256 |
catctatcacacaatgctcatttataaatagtatcacaaattgtattacatagaaaatacttgaacttacaagtcacttgctacttgatacaactattta |
355 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961221 |
catcaatcacacaatgctcatttataaatagtatcacaaattgtattacatagaaaatacttgaacttacaagtcacttgctacttgatacaactattta |
1961122 |
T |
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| Q |
356 |
ttacaatgtcacctacattacattgaacattcactcattgaact--actttgtaatgaccacagtctaaatatctaaaacagccagaaacaaaatcaaaa |
453 |
Q |
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| T |
1961121 |
ttacaatgtcacctacattacattgaacattcactcattgaactacactttgtaatgaccacagtctaaatatctaaaacagccagaaacaaaatcaaaa |
1961022 |
T |
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| Q |
454 |
tacaaggggaataatat |
470 |
Q |
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||||||||||||||||| |
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| T |
1961021 |
tacaaggggaataatat |
1961005 |
T |
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