View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_19 (Length: 464)
Name: NF19379_low_19
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 54 - 453
Target Start/End: Original strand, 19798803 - 19799207
Alignment:
| Q |
54 |
gattccatagctgaagattctttgatagaaaacagagaaagagaagcacatgaatggatagaatttgtgattattctcttttgattcattacaagtgtac |
153 |
Q |
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| T |
19798803 |
gattccatagttgaagattctttgatagaaaacagagaaagagaaacacatgaatggatagaatttgtgattgttctcttttgattcattacaagtgtac |
19798902 |
T |
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| Q |
154 |
aagtactatctatatgcagttattaaatggtggtacaaactagttactgtggtgctagttacacagaattactaacacctatccaactaacatctaacag |
253 |
Q |
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| T |
19798903 |
aagtactatctatatgcagttattaaatggtggtacaaactagttactgtggtgctagccgcacaaaattactaacacctatgcaactaacatctaatgg |
19799002 |
T |
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| Q |
254 |
acaactacttatcaactaattctgttatagtgttgtattcttcatcttgacatc-----tccttcaatatcccccactagatgaatccttgtatatgtct |
348 |
Q |
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| T |
19799003 |
acaactatttatcaactaattctgttatagtgttgtgttcttcatcttggcatctaacttccttcaatatctctgacaagatgaatcctggtatatgtct |
19799102 |
T |
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| Q |
349 |
accattcatgttttgttctttcatgaaacaccggacgtgcaacaaggtgtagggtgctctggttgtcaagtacaagacatgaatgtgatcacatgtaact |
448 |
Q |
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| T |
19799103 |
actattcatgttttgttctttcatgaaacactggatgtgcaacaatgtgtagggaactctgatcatcaagtacaagacatgaatgtgatcacatgtaact |
19799202 |
T |
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| Q |
449 |
ttcat |
453 |
Q |
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| T |
19799203 |
ttcat |
19799207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 19798756 - 19798786
Alignment:
| Q |
20 |
gatacaaactgccaagtcaatgataatgtac |
50 |
Q |
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| T |
19798756 |
gatacaaactgccaagtcaatgataatgtac |
19798786 |
T |
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