View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_low_20 (Length: 462)
Name: NF19379_low_20
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 13115191 - 13115625
Alignment:
| Q |
11 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13115191 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaatcccc |
13115290 |
T |
|
| Q |
111 |
tcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattg |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13115291 |
tcaccaagaagatcagtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattg |
13115390 |
T |
|
| Q |
211 |
tgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaagttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13115391 |
tgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaagttg |
13115490 |
T |
|
| Q |
311 |
gttgaacactgtgcctttcacaggtgcatattttgggtcccctatggattttcctttgaagattgtcatcatgatgaaacatatggctaggaaaattgct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13115491 |
gttgaacactgtgcctttcacaggtgcatattttgggtcccctatggattttcctttgaagattgtcatcatgatgaaacatatggctaggaaaattgct |
13115590 |
T |
|
| Q |
411 |
agaaaaaagaaagctatgaaagtcaacaaggtgta |
445 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| |
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|
| T |
13115591 |
agaaaaaagaaggctatggaagtcaacaaggtgta |
13115625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 18670247 - 18669813
Alignment:
| Q |
11 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccc |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
18670247 |
cacagaacaactaaaatctcgaagaactcttgtagaaaattcatagctagcaattttcctctgttgcttccacttgtcaccatcaacagcaaaaatcccc |
18670148 |
T |
|
| Q |
111 |
tcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattg |
210 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18670147 |
tcaccaaaaagatcagtaataatatcttgattatacttacctttagaatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattc |
18670048 |
T |
|
| Q |
211 |
tgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaagttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
18670047 |
tgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatcatggagtttcttgaagtagaatagttg |
18669948 |
T |
|
| Q |
311 |
gttgaacactgtgcctttcacaggtgcatattttgggtcccctatggattttcctttgaagattgtcatcatgatgaaacatatggctaggaaaattgct |
410 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18669947 |
gttgaacactgtgccttttacaggtgcatattttgggtcccctatggattttcctttgaagattgtcatcatgatgaaacatatggctaggaaaattgct |
18669848 |
T |
|
| Q |
411 |
agaaaaaagaaagctatgaaagtcaacaaggtgta |
445 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18669847 |
agaaaaaagaaggctatgaaagtcaacaaggtgta |
18669813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 438
Target Start/End: Original strand, 13105717 - 13106144
Alignment:
| Q |
11 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccc |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||| |||||||||| ||||||| ||| |
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|
| T |
13105717 |
cacagagcaactaaaatctctaagaactcttgtggagaattcatagctagcaaccttcctctgctgcttccacttgttaccatcaacaacaaaaatcccc |
13105816 |
T |
|
| Q |
111 |
tcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattg |
210 |
Q |
| |
|
||||||| |||||| || |||||||||| | ||||||||||| ||||||| |||||||| || |||||||||| |||||||||||||||||||||||||| |
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|
| T |
13105817 |
tcaccaaaaagatctgtcataatatcttgactatacttacctctagaatatttatcaaagtttgttttcaatacatgttcaatatttctcacatctattg |
13105916 |
T |
|
| Q |
211 |
tgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaagttg |
310 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||| |||| || ||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
13105917 |
tgtacaactcactatgatttggtgcaagaagtctataagttggatgaattttggccaattgagcatggtaatcatagagtttcttgaagtagaaaagttg |
13106016 |
T |
|
| Q |
311 |
gttgaacactgtgcctttcacaggtgcatattttgggtcccctatggattttcctttgaagattgtcatcatgatgaaacatatggctaggaaaattgct |
410 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13106017 |
gttgaacactgtgcctttaacaggtgtatactttgagtcccctattgattttcctttgaagattgtcatcatgatgaaacatatagctaggaaaattgct |
13106116 |
T |
|
| Q |
411 |
agaaaaaagaaagctatgaaagtcaaca |
438 |
Q |
| |
|
||| || |||| ||||||| |||||||| |
|
|
| T |
13106117 |
agagaagagaaggctatgagagtcaaca |
13106144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 13099922 - 13100359
Alignment:
| Q |
11 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||| |||||||| ||||||||||||||||||| |||||||| ||| |
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|
| T |
13099922 |
cacagaacaactaaaatctctaagaactcttgtggagaattcatagcttgcaactttcctctgctgtctccacttgtcaccatcaacggcaaaaatcccc |
13100021 |
T |
|
| Q |
111 |
tcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttcaatatttctcacatctattg |
210 |
Q |
| |
|
||||||| |||||| || |||| ||||| | ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13100022 |
tcaccaaaaagatctgtcataacatcttgactatacttacctctagaatatttatcaaaattggttttcaatacatgttcaatatttctcacatctattg |
13100121 |
T |
|
| Q |
211 |
tgtacaact---cactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatcatggagtttcttgaagttgaaaag |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||||| |||| || | |||||| |||||||||| |||||| ||||||| |||||| |
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|
| T |
13100122 |
tgtacaactgatcactttgatttggtgcaagaagtctataagttggatgaattttggccatttgagcttggtaatcatagagtttgttgaagtagaaaag |
13100221 |
T |
|
| Q |
308 |
ttggttgaacactgtgcctttcacaggtgcatattttgggtcccctatggattttcctttgaagattgtcatcatgatgaaacatatggctaggaaaatt |
407 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13100222 |
atggttgaacactgtgcctttaacaggtgcatattttgggtcccctattgattttcctttgaagattgtcatcaagatgaaacatatggctaggaaaatt |
13100321 |
T |
|
| Q |
408 |
gctagaaaaaagaaagctatgaaagtcaacaaggtgta |
445 |
Q |
| |
|
||||||| | |||| ||||||| |||||| | |||||| |
|
|
| T |
13100322 |
gctagaagagagaaggctatgagagtcaaaatggtgta |
13100359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 13080402 - 13080505
Alignment:
| Q |
21 |
ctaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccctcaccaagaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||| || || || || ||| |||| || ||||||||||||||||||| || ||||| | || |
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|
| T |
13080402 |
ctaaaatctctaagaactcttgtagaaaactccaaactagaaagcttcctttggtgcctccatttagcaccatcaacagcaaaaatcccatcacccaaaa |
13080501 |
T |
|
| Q |
121 |
gatc |
124 |
Q |
| |
|
|||| |
|
|
| T |
13080502 |
gatc |
13080505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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