View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_21 (Length: 455)
Name: NF19379_low_21
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_21 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 158 - 455
Target Start/End: Original strand, 32371530 - 32371824
Alignment:
| Q |
158 |
atgtctagagactaagattgtgattatcaatcactagaagctggataatatcgttcactagaaggnnnnnnnnngaatctagtttgtgaggtactcttta |
257 |
Q |
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| T |
32371530 |
atgtcaagagactaagattgtgattatcgatcactagaagctggataatatcgatcactagaaggaaaaaaaa--aatctagtttgtgaggtactcttta |
32371627 |
T |
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| Q |
258 |
cacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattcat |
357 |
Q |
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| T |
32371628 |
cacaaattgactggccttttatgcatcaaaa-atgttagcttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattcat |
32371726 |
T |
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| Q |
358 |
gaataaataaatactgtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaaccca |
455 |
Q |
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| T |
32371727 |
gaataaataaatactgtttggaattgtatttatatcatggttaaaaagcttgcaagtcagcttgtagacttggccaagtttacgagcccagcaaccca |
32371824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 241 - 455
Target Start/End: Complemental strand, 32365224 - 32365017
Alignment:
| Q |
241 |
ttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttg |
340 |
Q |
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| T |
32365224 |
ttgtgaggcactctttacacaaattgactggccttttatgcattaaaaaatgttaccttttatgctttcaaag-----actatgccctattttcaccttg |
32365130 |
T |
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| Q |
341 |
gaattgctgcaattcatgaataaataaatact--gtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagttt |
438 |
Q |
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| T |
32365129 |
gaattgc---aattcatgaataa-taaatactctgtctggaattgtatttatatcatggttagcaaactcgcaagtcagctcgtagagttggccaagttt |
32365034 |
T |
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| Q |
439 |
acgagcccagcaaccca |
455 |
Q |
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| T |
32365033 |
acgagtccagctaccca |
32365017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 32357047 - 32357192
Alignment:
| Q |
63 |
aaaggaagtgttgtaacattgtgagattgtttaatattctcaatttattatgtcaaatagccttgagtgggtcagcttatttt-ttcctccaaaacatgt |
161 |
Q |
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| T |
32357047 |
aaaggaagtgttgtaacattgtgagatggttcaatattcacaatttatgatgtcaaataaccttgagtgg-tcaggttatttttttcctccaaaacatgt |
32357145 |
T |
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| Q |
162 |
ctagagactaagattgtgattatcaatcactagaagctggataatat |
208 |
Q |
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| T |
32357146 |
ctagaaactaagattgtgactatctatcactagaagctggataatat |
32357192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 32371429 - 32371536
Alignment:
| Q |
17 |
atatctaggtcagaaggcaacaaccttagtattatagtgaggctc------gaaaggaagtgttgtaacattgtgagattgtttaatattctcaatttat |
110 |
Q |
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| T |
32371429 |
atatctaggtcagaaggcaacaaccttagtattatactgaggctctccctcgaaaggaagtgttgtaacattgtgagattgtttaatattcacaatttat |
32371528 |
T |
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| Q |
111 |
tatgtcaa |
118 |
Q |
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| T |
32371529 |
tatgtcaa |
32371536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 32357335 - 32357484
Alignment:
| Q |
236 |
ctagtttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttca |
335 |
Q |
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||||||||||| ||| ||||||||| || ||||||||||||||||||| | | || ||||||||||||| |||| |||| |||||| |||| |||||| |
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| T |
32357335 |
ctagtttgtgaagtattctttacaccaactgactggccttttatgcattagagaagtttaggttttatgccttcaccggcagaactcttccttcttttca |
32357434 |
T |
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| Q |
336 |
ccttggaattgctgcaattcatgaataaataaata--ctgtttggaattgtat |
386 |
Q |
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| T |
32357435 |
tcccagaat---tgcaattcatgaataaagaaatactctgtttgtaattgtat |
32357484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 32364939 - 32364860
Alignment:
| Q |
118 |
aatagccttgagtgggtcagcttattttttcctccaaaacatgtctagagactaagattgtgattatcaatcactagaagct |
199 |
Q |
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| T |
32364939 |
aataaccttgagtgggtcaggttattttttcctccaaaac--gtctagaaattaagattctaactatctatcactagaagct |
32364860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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