View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_22 (Length: 437)
Name: NF19379_low_22
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 53395109 - 53394704
Alignment:
| Q |
17 |
atgatgctgtcattgttggcgagaccgaaagtgaaggcgcttgagttaacggcgcgtgttaagcttaaacgattcccggtgatggaaacggaggaactta |
116 |
Q |
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| T |
53395109 |
atgatgctgtcattgttggcgagaccgaaagtgaaggcgcttgagttaacggcgcgtgttaagcttaaacgattcccggtgatggaaacggaggaactta |
53395010 |
T |
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| Q |
117 |
ggtaaagctgaaccgcgttgtagagttcgttggtgttaacgccgtcgatttcggttatttcgaagtaacagtaagatgagaaacagttgaagagtttgtt |
216 |
Q |
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| T |
53395009 |
ggtaaagctgaaccgcgttgtagagttcgttggtgttaacgccgtcgatttcggttatttcgaagtaacagtaagatgagaaacagttgaagagtttgtt |
53394910 |
T |
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| Q |
217 |
gaaaagtttagcggaagcgaaacggagttctggtggaaaaactgtttggaggattgtttgaaagaatgcaaatacaccaagaattgatgcaagagaagtc |
316 |
Q |
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| T |
53394909 |
gaaaagtttagcggaagcgaaacggagttctggtggaaaaactgtttggaggattgtttgaaagaatgcaaatacaccaagaattgatgcaagagaagtc |
53394810 |
T |
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| Q |
317 |
caatattctttcattctaatggttttggttttggttttaggaatatgatgattttttgttgagagaggatatgaaaatgaaataatgtaatttttaatga |
416 |
Q |
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| T |
53394809 |
caatattctttcattttaatggttttggttttggttttagga--atgatgattttttgttgagagaggat------atgaaataatgtaatttttaatga |
53394718 |
T |
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| Q |
417 |
gaaggtgatgatgt |
430 |
Q |
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| T |
53394717 |
gaaggtggtgatgt |
53394704 |
T |
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