View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_23 (Length: 436)
Name: NF19379_low_23
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Complemental strand, 6145979 - 6145568
Alignment:
| Q |
12 |
tcatcagtttgtgcagcaatagtaagtccgaatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattg |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145979 |
tcatcagtttgtgcaacaatagtaagtccggatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattg |
6145880 |
T |
|
| Q |
112 |
tttgttgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttctaggaataacctaacatgtggagg |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6145879 |
tttgttgcggtggtacataactactgggccacacaggaacaattgttggagaaggaatttgattcacacgaccttctaggaataacctaacatgtggagg |
6145780 |
T |
|
| Q |
212 |
gctattaatttcgg-ccgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtttcttgtgatgaa |
310 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145779 |
gctattaatttcggaccgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtttcttgtgatgaa |
6145680 |
T |
|
| Q |
311 |
gacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttcag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145679 |
gacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgtgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttcac |
6145580 |
T |
|
| Q |
411 |
ctctagtgaatg |
422 |
Q |
| |
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|||||||||||| |
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|
| T |
6145579 |
ctctagtgaatg |
6145568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 6126561 - 6126149
Alignment:
| Q |
14 |
atcagtttgtgcagcaatagtaagtccgaatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattgtt |
113 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||| || ||||||| | |||||||||||||| |||||| | |
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|
| T |
6126561 |
atcagtttgtgcagcaatagtaaatccggatccaagaggaaacggaggagggtttagccggttataattactcagcgaagcgtctgaagttgttattggt |
6126462 |
T |
|
| Q |
114 |
tgttgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttctaggaataacctaacatgtggagggc |
213 |
Q |
| |
|
||||| ||||||| | ||| ||||||||||||| || ||||| |||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
6126461 |
tgttgtggtggtatagaactactgggccacacatgagcaatttttggtgaagcaatttgattcacacgaccttctgagaataacctaacatgtggagggc |
6126362 |
T |
|
| Q |
214 |
tattaatttcg-gccgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtttctt---gtgatga |
309 |
Q |
| |
|
||||||||||| | || | |||||||||||||||||||||| ||||||| ||||||||| ||||| ||| | ||||||||||||||||| || | || |
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|
| T |
6126361 |
tattaatttcgaactgagtagtagcactacttggtcctgcatctatatcagcatcttcatacatcaagaacttatcccaaaatgtttcttgcggtaaaga |
6126262 |
T |
|
| Q |
310 |
agacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttca |
409 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
6126261 |
agacgtgttgacattgtcttgatgaatatgaaaaggaggaggaagagtgcgtcttctgattgagcttctgtcaacttgtgaaccttgattagaagtttca |
6126162 |
T |
|
| Q |
410 |
gctctagtgaatg |
422 |
Q |
| |
|
||||| |||||| |
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|
| T |
6126161 |
cctctaatgaatg |
6126149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 233 - 422
Target Start/End: Original strand, 33802751 - 33802946
Alignment:
| Q |
233 |
gtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtttctt---gtgatgaagacatgtt---gacattgt |
326 |
Q |
| |
|
|||| ||||||| ||||||| | || |||| ||||||||| ||| | ||||||||||||||||||| | || | ||||||||||| |||||||| |
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|
| T |
33802751 |
gtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgt |
33802850 |
T |
|
| Q |
327 |
cttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttcagctctagtgaatg |
422 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||||||||||| | ||||| |||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
33802851 |
cttgataaggatgaaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatg |
33802946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 422
Target Start/End: Original strand, 33731372 - 33731567
Alignment:
| Q |
233 |
gtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtttctt---gtgatgaagacatgtt---gacattgt |
326 |
Q |
| |
|
|||| ||||||| ||||||| | || |||| ||||||||| ||| | ||||||||||||||||||| | || | ||||||||||| |||||||| |
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|
| T |
33731372 |
gtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgt |
33731471 |
T |
|
| Q |
327 |
cttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttcagctctagtgaatg |
422 |
Q |
| |
|
|||||| | |||||||||||||||||| |||| |||||||||| | ||||| |||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
33731472 |
cttgataaggatgaaaaggaggaggaagagtgtgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcccctctagtgaatg |
33731567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 6152163 - 6152049
Alignment:
| Q |
14 |
atcagtttgtgcagcaatagtaagtccgaatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattgtt |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||||| |||||||||||||| || | ||||| |||||| | |
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|
| T |
6152163 |
atcagtttgtgcagcaatagtaaatccgaatccaagaggagctggaggagggtttagctggtaataattactcggtgaagggtttaaagtcgttattggt |
6152064 |
T |
|
| Q |
114 |
tgttgcggtggtaca |
128 |
Q |
| |
|
|| | ||||||||| |
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|
| T |
6152063 |
tgccgtggtggtaca |
6152049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 34283755 - 34283569
Alignment:
| Q |
17 |
agtttgtgcagcaatagtaagtccgaatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattgtttgt |
116 |
Q |
| |
|
||||||| || ||||||||| ||| ||||| || |||| | || |||||||||| |||| |||||||| || || ||||||||| |||||| |||| |
|
|
| T |
34283755 |
agtttgtacatcaatagtaaatcccgatccaggaagagatggagaagggtttagc---taataattactcgatggaggatctgaagtcgttattggttgt |
34283659 |
T |
|
| Q |
117 |
tgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttctaggaataacctaacatgt |
206 |
Q |
| |
|
| ||||||||| ||| | | ||||||||| ||| ||| ||||||||||||||| |||||||| ||||||| ||||||||||||||| |
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|
| T |
34283658 |
cgtggtggtacaaaactaataggccacacatgaaaaatagttggagaaggaattcgattcacaagaccttctgtcaataacctaacatgt |
34283569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 6138634 - 6138523
Alignment:
| Q |
304 |
tgatgaagacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaa |
403 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||||||| || ||||| |||||||||||| || || | ||| ||| | |||||||||||| |||| |
|
|
| T |
6138634 |
tgatgacgacatgttgacgttgtcttgatgagtatgaaaaaaagaaggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaa |
6138535 |
T |
|
| Q |
404 |
gtttcagctcta |
415 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
6138534 |
gtttcacctcta |
6138523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 34282889 - 34283003
Alignment:
| Q |
90 |
gaagcgtctgaagtcattattgtttgttgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttcta |
189 |
Q |
| |
|
|||| |||||||||| |||||| |||| | |||| |||| ||| || ||||||||| | ||||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
34282889 |
gaagggtctgaagtcgttattggttgtcgtggtg-tacaaaactaccaggccacacatgcacaatagatggagaaggaatttgattcacatgaccttctg |
34282987 |
T |
|
| Q |
190 |
ggaataacctaacatg |
205 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34282988 |
tcaataacctaacatg |
34283003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 6152031 - 6151988
Alignment:
| Q |
379 |
gtcaacttgtgaaccttgattagaagtttcagctctagtgaatg |
422 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
6152031 |
gtcaacttgtaaaccttgattagaagtttcacctctagttaatg |
6151988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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