View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_low_24 (Length: 430)

Name: NF19379_low_24
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_low_24
NF19379_low_24
[»] chr8 (1 HSPs)
chr8 (1-409)||(38523989-38524397)
[»] chr3 (6 HSPs)
chr3 (316-392)||(43460651-43460727)
chr3 (146-222)||(21007763-21007839)
chr3 (176-221)||(218045-218090)
chr3 (123-187)||(51667074-51667139)
chr3 (146-218)||(40339076-40339148)
chr3 (119-166)||(41115456-41115504)
[»] chr2 (3 HSPs)
chr2 (36-161)||(4908737-4908863)
chr2 (174-206)||(14110589-14110621)
chr2 (144-220)||(42982443-42982519)
[»] chr7 (1 HSPs)
chr7 (45-201)||(45369070-45369227)
[»] chr6 (1 HSPs)
chr6 (41-218)||(29240468-29240646)
[»] chr5 (1 HSPs)
chr5 (176-218)||(35108130-35108172)
[»] chr4 (1 HSPs)
chr4 (145-218)||(47596416-47596490)
[»] scaffold0393 (1 HSPs)
scaffold0393 (119-159)||(12401-12442)
[»] chr1 (1 HSPs)
chr1 (27-187)||(41517203-41517364)


Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 38523989 - 38524397
Alignment:
Q  1 tggtttacatttgtatacaattatgaaaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38523989 tggtttacatttgtatacaattatgaaaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctg 38524088  T
Q  101 ttaaaatgagttcggaatgcaaaatcaattttacttgagaactccaaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38524089 ttaaaatgagttcggaatgcaaaatcaattttacttgagaactccaaacatgtcaaaatcagttctccttctttgaaataaattttgacttctccaaaag 38524188  T
Q  201 ttaaaccaaagatacactaaaatcatgcaaataagttgttttaaatagtttatttaatacatatcagggaggggggaattgaaaagggtgatgaattatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38524189 ttaaaccaaagatacactaaaatcatgcaaataagttgttttaaatagtttatttaatacatatcagggaggggggaattgaaaagggtgatgaattatg 38524288  T
Q  301 actataccaaaagtgaaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaacagccatgatgcaagatcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38524289 actataccaaaagtgaaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaacagccatgatgcaagatcaa 38524388  T
Q  401 gtgcaatct 409  Q
    |||||||||    
T  38524389 gtgcaatct 38524397  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 43460651 - 43460727
Alignment:
Q  316 aaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaacagccatgatgc 392  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||| || || || || |||| |||||||||    
T  43460651 aaaccatatgtggccatcagggctttgttcacaaggattattcccacagacgtaacgacgttaaacaaccatgatgc 43460727  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 21007763 - 21007839
Alignment:
Q  146 aaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacactaaaa 222  Q
    |||||||||||||||| || |   ||||| |||||||||||| || |||||||||| |||||||| || ||||||||    
T  21007763 aaacatgtcaaaatcaattatatatctttaaaatcaattttggctcctccaaaagtgaaaccaaatatccactaaaa 21007839  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 218045 - 218090
Alignment:
Q  176 aaatcaattttgacttctccaaaagttaaaccaaagatacactaaa 221  Q
    |||||||||||| ||| ||||||||| |||||||| ||||||||||    
T  218045 aaatcaattttgccttatccaaaagtgaaaccaaacatacactaaa 218090  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 51667139 - 51667074
Alignment:
Q  123 aatcaattttacttgagaac-tccaaacatgtcaaaatcagttctccttctttgaaatcaattttg 187  Q
    |||||||| ||||||||| | || ||||||||||||||||||| | | ||||| ||||||||||||    
T  51667139 aatcaattatacttgagagcatcaaaacatgtcaaaatcagttgtacatctttaaaatcaattttg 51667074  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 40339148 - 40339076
Alignment:
Q  146 aaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacact 218  Q
    |||||||||||||||| || | || || | |||||||||||| |   |||||||||||||||||| |||||||    
T  40339148 aaacatgtcaaaatcaattatactcctctaaaatcaattttggcccttccaaaagttaaaccaaacatacact 40339076  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 41115456 - 41115504
Alignment:
Q  119 gcaaaatcaattttacttgagaac-tccaaacatgtcaaaatcagttct 166  Q
    |||||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  41115456 gcaaaatcaattctactttaaaacatccaaacatgtcaaaatcagttct 41115504  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 4908863 - 4908737
Alignment:
Q  36 ttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttact 135  Q
    |||||||||||| | |||  | ||||| ||||||||| || ||| || |||||||||||||   |||| ||| | ||||||| |||||||||||| ||||    
T  4908863 ttgaacaataaagttaaggctgaaaatcaattgtagaagccaaatctacaaattttagctttaagttagaataaattcggaaggcaaaatcaattctact 4908764  T
Q  136 tgagaac-tccaaacatgtcaaaatca 161  Q
     || ||| | |||||||||||||||||    
T  4908763 cgaaaacatacaaacatgtcaaaatca 4908737  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 14110621 - 14110589
Alignment:
Q  174 tgaaatcaattttgacttctccaaaagttaaac 206  Q
    |||||||||||||||||||||||||||| ||||    
T  14110621 tgaaatcaattttgacttctccaaaagtgaaac 14110589  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 42982519 - 42982443
Alignment:
Q  144 ccaaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacactaa 220  Q
    ||||||||||||||||||||||| | | |||  ||| ||||| || | ||||||||||  ||||||| |||||||||    
T  42982519 ccaaacatgtcaaaatcagttctacatgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaa 42982443  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 45369227 - 45369070
Alignment:
Q  45 aaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgagaac-t 143  Q
    ||||||||  ||| |||| |||| ||||||| ||| || | |||| |||||||  |||||||| | |||   | |||||||||||| ||||||||||| |    
T  45369227 aaattcaatgttacaaatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacat 45369128  T
Q  144 ccaaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagt 201  Q
    |||||||| |||||||||  ||| |  || |||||||||||||| || || |||||||    
T  45369127 ccaaacatctcaaaatcaaatctacacctctgaaatcaattttgtctccttcaaaagt 45369070  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 29240468 - 29240646
Alignment:
Q  41 caataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgaga 140  Q
    |||||||||| ||  ||||| | |||||||| ||| |||||||||||||||||||||  |||| ||| |  || | | | |||||||||| ||||||| |    
T  29240468 caataaattcgaggctaaaattcaattgtaggggcaaaaacttcaaattttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaa 29240567  T
Q  141 a-ctccaaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacact 218  Q
    |  ||| ||||||||||||||| || | |  || |  |||||||||||| | | ||||||||  ||||||| |||||||    
T  29240568 atatcctaacatgtcaaaatcaattttacacctctagaatcaattttgattcccccaaaagtggaaccaaacatacact 29240646  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 35108172 - 35108130
Alignment:
Q  176 aaatcaattttgacttctccaaaagttaaaccaaagatacact 218  Q
    |||||||||||||| |||| |||||| ||||||||||||||||    
T  35108172 aaatcaattttgacctctctaaaagtgaaaccaaagatacact 35108130  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 47596416 - 47596490
Alignment:
Q  145 caaacatgtcaa-aatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacact 218  Q
    |||||||||||| ||||| ||||||  |||| ||||||||||||| | |||||||||| |||||| | |||||||    
T  47596416 caaacatgtcaacaatcaattctccacctttaaaatcaattttgattcctccaaaagtgaaaccatacatacact 47596490  T

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Target: scaffold0393 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 12401 - 12442
Alignment:
Q  119 gcaaaatcaattttacttgagaac-tccaaacatgtcaaaat 159  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  12401 gcaaaatcaattctacttgagaacatccaaacatgtcaaaat 12442  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 41517203 - 41517364
Alignment:
Q  27 aaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatc 126  Q
    |||||| | ||||||||||||||  |  ||||||||  ||||||||||| ||| |||  |||| |||||||   ||| ||| ||||| ||||||||||||    
T  41517203 aaaaatggtttgaacaataaatttgaagttaaaaattgattgtagaggcaaaagctttgaattctagcttcacattagaatcagttctgaatgcaaaatc 41517302  T
Q  127 aattttacttgagaac-tccaaacatgtcaaaatcagttctccttctttgaaatcaattttg 187  Q
    | || |||| |||||| ||  |  |||||||||||| |||| | |||||  |||||||||||    
T  41517303 agttctactagagaacatcagagaatgtcaaaatcaattctacatctttagaatcaattttg 41517364  T

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