View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_27 (Length: 420)
Name: NF19379_low_27
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_27 |
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| [»] scaffold1173 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 404
Target Start/End: Complemental strand, 17854651 - 17854272
Alignment:
| Q |
21 |
gtggtgtcatttgataatagactggataggattcaaatgacggaagtggaatgggtacatttgcatctgtggtctctttcttcttctcctcatttagagc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
17854651 |
gtggtgtcatttgataatagactggataggattcaaatgacggaagtggaatgggtacatttgcatccgtggtctctttcttct---cctcatttagagc |
17854555 |
T |
|
| Q |
121 |
tccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaaggtcaatttcttctcattagtg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17854554 |
tccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaacgtcaatttcttctcattagtg |
17854455 |
T |
|
| Q |
221 |
tctattgatactgatccaacccctgcaaaattgacaaagaaaaacaatgaatcctttaatgtaatatggtttgtatcttttttacacaaaggttaaatta |
320 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17854454 |
tctattgatactgattcaacccctgcaatattgacaaagaaaaacaatgaatcc-ttaatgtaatatggtttgtatcttttttacacaaaggttaaatta |
17854356 |
T |
|
| Q |
321 |
atttgcattcacaaatgacccaattcaaatcctatttgaaataattcttaaatgttcattagcggcatcgttattaatactaat |
404 |
Q |
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| T |
17854355 |
atttgcattcacaaatgacccaattcaaatcctatttgaaataattcttaaatgttcattagcggcatcgttattaatactaat |
17854272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 17192733 - 17192883
Alignment:
| Q |
101 |
ttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaagg |
200 |
Q |
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| T |
17192733 |
ttcttctcttcttttagaggtccaattgaaactatttcagtttgacacaactttcttagcttgcacactccttttatcggatcaatatcccctgatattg |
17192832 |
T |
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| Q |
201 |
tcaatttcttctcattagtgtctattgatactgatccaacccctgcaaaat |
251 |
Q |
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||||||||||||| || |||||||||||||||| ||||||||||||||| |
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| T |
17192833 |
tcaatttcttctctttccagtctattgatactgattcaacccctgcaaaat |
17192883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 321
Target Start/End: Original strand, 17186849 - 17187067
Alignment:
| Q |
100 |
cttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaag |
199 |
Q |
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| T |
17186849 |
cttcttctcatcttttaaaggtccaattgatactatttcagtttgacacaactttcttagcttgcacactgcctttacaggatcaatatcccccgataat |
17186948 |
T |
|
| Q |
200 |
gtcaatttcttctcattagtgtctattgatactgatccaacccctgcaaaattgacaaagaaaaacaatgaatcctttaatgtaatatggtttgtatctt |
299 |
Q |
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| T |
17186949 |
gtcaatttcttctctttcgagtctattgctactgattcagcccctgcaaaat--agaaagaaaaa-aatgaatcattt-gtgttagatggtttgtctatt |
17187044 |
T |
|
| Q |
300 |
t-tttacacaaaggttaaattaa |
321 |
Q |
| |
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| T |
17187045 |
tatttacacaaaggtcaaattaa |
17187067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 251
Target Start/End: Complemental strand, 11391323 - 11391173
Alignment:
| Q |
101 |
ttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaagg |
200 |
Q |
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||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||| || | | ||| | ||||| ||||| | |||||| | ||| | |
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| T |
11391323 |
ttcttctcctcttttagaggtccaatcgaaactacttcagtttgacacaactttcttaactcgcatactgcctttattggatcgatatcccccgataatg |
11391224 |
T |
|
| Q |
201 |
tcaatttcttctcattagtgtctattgatactgatccaacccctgcaaaat |
251 |
Q |
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| ||||||||||| || | ||||||||||| |||| ||||||||||||||| |
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| T |
11391223 |
ttaatttcttctctttcgagtctattgatattgattcaacccctgcaaaat |
11391173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 11366733 - 11366582
Alignment:
| Q |
100 |
cttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaag |
199 |
Q |
| |
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| T |
11366733 |
cttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacactacctttactggatcaatatccccagatact |
11366634 |
T |
|
| Q |
200 |
gtcaatttcttctcattagtgtctattgatactgatccaacccctgcaaaat |
251 |
Q |
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|||||||||||||| || | ||||||||||| |||| ||| ||||||||||| |
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| T |
11366633 |
gtcaatttcttctctttcgagtctattgataatgattcaaaccctgcaaaat |
11366582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 11375441 - 11375290
Alignment:
| Q |
100 |
cttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaag |
199 |
Q |
| |
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||||||||| || ||||||| |||||| || |||| ||| |||||||||||||||| ||| || | ||||| |||| ||||||| |||||| | || |
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| T |
11375441 |
cttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacactacctttactggatcaatatccccagatact |
11375342 |
T |
|
| Q |
200 |
gtcaatttcttctcattagtgtctattgatactgatccaacccctgcaaaat |
251 |
Q |
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||||||||||||| || | ||||||||||| |||| ||||||||||||||| |
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| T |
11375341 |
atcaatttcttctctttcgagtctattgataatgattcaacccctgcaaaat |
11375290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 11385279 - 11385128
Alignment:
| Q |
100 |
cttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaag |
199 |
Q |
| |
|
||||||||| || ||||||| |||||| || |||| ||| |||||||||||||||| ||| || | ||||| |||| ||||||| |||||| | || |
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| T |
11385279 |
cttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacactacctttactggatcaatatccccagatact |
11385180 |
T |
|
| Q |
200 |
gtcaatttcttctcattagtgtctattgatactgatccaacccctgcaaaat |
251 |
Q |
| |
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|||||||||||||| || | ||||||||||| |||| ||| ||||||||||| |
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| T |
11385179 |
gtcaatttcttctctttcgagtctattgataatgattcaaaccctgcaaaat |
11385128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1173 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1173
Description:
Target: scaffold1173; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 273
Target Start/End: Complemental strand, 2060 - 1889
Alignment:
| Q |
100 |
cttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttcgtagtttagagactacttttataggatcaacatcccctgttaag |
199 |
Q |
| |
|
|||||||| || |||| || |||||| || |||| ||| |||||||||||||||| ||| || | ||| | |||| ||||||| |||||| | ||| |
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| T |
2060 |
cttcttcttatcttttaaaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacactgcctttactggatcaatatcccccgataat |
1961 |
T |
|
| Q |
200 |
gtcaatttcttctcattagtgtctattgatactgatccaacccctgcaaaattgacaaagaaaaacaatgaatc |
273 |
Q |
| |
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|||||||||||||| || | |||||||| ||||||| ||||||||||||||| | ||||||||| |||||||| |
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| T |
1960 |
gtcaatttcttctctttcgagtctattgctactgattcaacccctgcaaaat--agaaagaaaaaaaatgaatc |
1889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 45035993 - 45036062
Alignment:
| Q |
179 |
ggatcaacatcccctgttaaggtcaatttcttctcattagtgtctattgatactgatccaacccctgcaa |
248 |
Q |
| |
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||||||| ||| ||| ||||||||| |||||| || || |||||||||| |||||| |||||||||||| |
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|
| T |
45035993 |
ggatcaatatctcctattaaggtcattttcttgtctttcatgtctattgaaactgattcaacccctgcaa |
45036062 |
T |
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