View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_low_28 (Length: 415)
Name: NF19379_low_28
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_28 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23017070 - 23017467
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23017070 |
accaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
23017169 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23017170 |
tctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
23017269 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
23017270 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatttatgcatttttcatcaacccgtcctttcatttttat |
23017369 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23017370 |
aacatccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctgtggtgcttgctgatgtctcacctc |
23017467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23145928 - 23146325
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23145928 |
accaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagtagtttgga |
23146027 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| | |||||||||||| | || |||||| ||||||| |||||||||||||||| ||| |||||| ||| || ||||||||| |||| ||||| |
|
|
| T |
23146028 |
tctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctcggtaacaaaa |
23146127 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
||||| ||| ||| |||| || | |||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||| | |||||||||| || |
|
|
| T |
23146128 |
gaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaa |
23146227 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23146228 |
aacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgtctcacctc |
23146325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23148766 - 23149163
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
23148766 |
accaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtttgaa |
23148865 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| || ||||||| || ||||||||||||| ||| ||||| |||| || ||||||||| |||| ||||| |
|
|
| T |
23148866 |
tctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctcggtaacaaaa |
23148965 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
||||| | | ||| |||| || | |||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||| | |||||||||| || |
|
|
| T |
23148966 |
gaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctttcattttgaa |
23149065 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||| | ||| ||| |||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23149066 |
aacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgtctcgcctc |
23149163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23039049 - 23039446
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| || | ||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| || ||||||||||| |||||| |
|
|
| T |
23039049 |
accaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatttgga |
23039148 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||| ||||||||||| || || |||||||||||| ||||||| |
|
|
| T |
23039149 |
tctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttggcagcaaaa |
23039248 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
||||| || ||| ||||| || |||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||| | |||||||||| || |
|
|
| T |
23039249 |
gaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaa |
23039348 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23039349 |
aacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctaccattgcccagtctatggtgcttgctgatgtctcacctc |
23039446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23036178 - 23036575
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| || ||||||||| |||| ||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23036178 |
accaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
23036277 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||| | ||||| |||||| |||||||||||||||| |||| ||||||||| | |||| |||||||||||||||| |
|
|
| T |
23036278 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
23036377 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
||||| || ||| ||||| || |||||||||||||| |||||||||| |||| ||||||| ||||| || || || || |||| | |||||||||| || |
|
|
| T |
23036378 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctttcattttgaa |
23036477 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036478 |
aacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctc |
23036575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23140054 - 23140451
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| || || | |||| |||||||||||||| | | | |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23140054 |
accaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttgga |
23140153 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
||||| ||||||||||| ||||| | | |||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
23140154 |
tctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctcttggtagcaaaa |
23140253 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
|||| || | || ||||| || | |||||||||||| | |||||||| |||| ||| || |||||||| ||||||||||||| | |||||||||| || |
|
|
| T |
23140254 |
gaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcattttgaa |
23140353 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23140354 |
aacctctctcacctcatcttgcactttcttcattattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctc |
23140451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 75 - 398
Target Start/End: Original strand, 23032781 - 23033104
Alignment:
| Q |
75 |
tctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgc |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| | |||| ||||||||||||||||| |||||||||||| |
|
|
| T |
23032781 |
tctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgc |
23032880 |
T |
|
| Q |
175 |
tttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttt |
274 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| ||| || || ||||||||||||||||| |||||||||| |||| |||| || |||| | ||| |
|
|
| T |
23032881 |
ttgaccgcattctcttggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattt |
23032980 |
T |
|
| Q |
275 |
tcatcaacccgttctttcatttttaaaacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatcta |
374 |
Q |
| |
|
||||||||| | |||||||||| |||||||| ||||| ||| ||||||||||||||||||||| | ||| |||||||||||| |||| |||||||||| |
|
|
| T |
23032981 |
tcatcaacctttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatcta |
23033080 |
T |
|
| Q |
375 |
tggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
23033081 |
tggtgcttgctgatgtctcgcctc |
23033104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23024280 - 23024677
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||||||||| || || ||||||||| |||||||||||||| | || || ||||||||||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
23024280 |
accaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttgga |
23024379 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||| |||||| ||| |||| |||||| | ||||| ||||| || | |||||||||| |||| |||| |
|
|
| T |
23024380 |
tctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaaaa |
23024479 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
| ||| | | ||| ||||| || |||||||||||||||| |||||||| |||| | ||||||||||| || || || ||||||| | ||||||| || || |
|
|
| T |
23024480 |
gtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcatattgaa |
23024579 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
|| ||| | ||| ||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23024580 |
aatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctc |
23024677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 22946461 - 22946587
Alignment:
| Q |
50 |
tcaatgaatctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggta |
149 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||| |||||||| || |||||||| ||| | |||||||||||||| ||||||||| | | || | ||||| |
|
|
| T |
22946461 |
tcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctactattgattggta |
22946560 |
T |
|
| Q |
150 |
tgtgataaccatgtatctcacatgctt |
176 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
22946561 |
tgtgataaccatcaatctcacatgctt |
22946587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 22972008 - 22972134
Alignment:
| Q |
50 |
tcaatgaatctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggta |
149 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||| |||||||| || |||||||| ||| | |||||||||||||| ||||||||| | | || | ||||| |
|
|
| T |
22972008 |
tcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggta |
22972107 |
T |
|
| Q |
150 |
tgtgataaccatgtatctcacatgctt |
176 |
Q |
| |
|
|||||||||||| |||||||| |||| |
|
|
| T |
22972108 |
tgtgataaccatcaatctcacaagctt |
22972134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 22831937 - 22832042
Alignment:
| Q |
95 |
tttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggta |
194 |
Q |
| |
|
|||||||||||| | || ||||||||||| | |||||| || | |||| ||||| | ||| |||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
22831937 |
tttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaa |
22832036 |
T |
|
| Q |
195 |
gcaaaa |
200 |
Q |
| |
|
|||||| |
|
|
| T |
22832037 |
gcaaaa |
22832042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 22919131 - 22919252
Alignment:
| Q |
50 |
tcaatgaatctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggta |
149 |
Q |
| |
|
|||||||| || ||||||||||| |||| |||||| |||||||||||||||| || | ||||| | ||||||| ||| || || |||||| |||||| |
|
|
| T |
22919131 |
tcaatgaacctttctggataaaatttcttcggttcattccagtagtttggatccattccaattgcagacgcattaactatgactttagtcttagctggta |
22919230 |
T |
|
| Q |
150 |
tgtgataaccatgtatctcaca |
171 |
Q |
| |
|
| | ||| |||| ||| ||||| |
|
|
| T |
22919231 |
tttcatatccatttatttcaca |
22919252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 22941472 - 22941367
Alignment:
| Q |
95 |
tttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggta |
194 |
Q |
| |
|
|||||||||||| | || ||||||||||| | |||||| || | |||| ||||| | ||| |||| ||| |||||||||| |||||||||||||| | |
|
|
| T |
22941472 |
tttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctcttggaa |
22941373 |
T |
|
| Q |
195 |
gcaaaa |
200 |
Q |
| |
|
|||||| |
|
|
| T |
22941372 |
gcaaaa |
22941367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 21779821 - 21780218
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||| |||||||| || || |||||| ||||| |||||||| |||| || ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21779821 |
accaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttgga |
21779920 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||||| || ||||| ||||||| ||| |||||||||| || ||||||||| |||| ||||| |
|
|
| T |
21779921 |
tctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctcggtaacaaaa |
21780020 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
||||| ||| ||| |||| || | ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| | |||||||||| || |
|
|
| T |
21780021 |
gaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaa |
21780120 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21780121 |
aacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctc |
21780218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 6746 - 6349
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| || || |||| | |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6746 |
accaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttgga |
6647 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| || ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6646 |
tctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctcttggtagcaaaa |
6547 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
||||| ||| ||| ||||| ||||||||||||||||| |||||||||| |||| |||||| | ||| | |||||||||||| | | |||| | | || |
|
|
| T |
6546 |
gaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaatgtaattttcatcaacctttccattcaatgtaaa |
6447 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctatggtgcttgctgatgtctcacctc |
398 |
Q |
| |
|
||| || | ||| ||| ||||||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
6446 |
aacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatctatggtggttgctgatgtatcacctc |
6349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 12609913 - 12610245
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||| |||||||| || || ||| || |||| ||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12609913 |
accaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttgga |
12610012 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| | || ||||| ||||| | ||||||||| | || | |||||| |||| |||| ||||||||||||| |||||||||||||| || |||| |
|
|
| T |
12610013 |
tctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaa |
12610112 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattgatgcatttttcatcaacccgttctttcatttttaa |
300 |
Q |
| |
|
|||| ||| ||||||||| || | ||| ||||| |||||||| || | |||| |||||||||| || || ||||| ||||| | ||||||| || || |
|
|
| T |
12610113 |
gaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaa |
12610212 |
T |
|
| Q |
301 |
aacctccctcacttcatcttgtgctttcttcat |
333 |
Q |
| |
|
| || || || |||||||||||||||||||| |
|
|
| T |
12610213 |
tatatctcttacctcatcttgtgctttcttcat |
12610245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 15885954 - 15885691
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| || || ||| || |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
15885954 |
accaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttgga |
15885855 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| | || ||||| ||||| | ||||||||| | || |||||| |||||||||| ||||||||||||| ||||||||||||| || |||| |
|
|
| T |
15885854 |
tctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaaaa |
15885755 |
T |
|
| Q |
201 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatt |
264 |
Q |
| |
|
|||| ||| ||| ||||| || | ||| ||||| |||||||| |||| |||| |||| ||||| |
|
|
| T |
15885754 |
gaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcatt |
15885691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 12637009 - 12637197
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| || || ||| | |||| ||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
12637009 |
accaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttgga |
12637108 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctct |
189 |
Q |
| |
|
||||| | |||| ||| ||||| | ||||||||| | || ||||||| ||||| || | || |||||||||| ||||||||||| |
|
|
| T |
12637109 |
tctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct |
12637197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 62161 - 62363
Alignment:
| Q |
1 |
accaaaaggaatgtattcgaagttactcgctttatagtcaataccgctgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| ||||| ||| || | || ||||||||| || ||||||||||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
62161 |
accaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttgga |
62260 |
T |
|
| Q |
101 |
tctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||| ||| || || | |||||| ||||| |||| ||||||||||||| | |||||||||||| || |||| |
|
|
| T |
62261 |
tctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttggaagtaaaa |
62360 |
T |
|
| Q |
201 |
gag |
203 |
Q |
| |
|
||| |
|
|
| T |
62361 |
gag |
62363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 62468 - 62504
Alignment:
| Q |
308 |
ctcacttcatcttgtgctttcttcattattcttggat |
344 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |
|
|
| T |
62468 |
ctcacttcatcttgtgctttcttcatcactcttggat |
62504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 5594128 - 5594023
Alignment:
| Q |
95 |
tttggatctcttgcgattgcccaagcattaattatcaccttcgtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggta |
194 |
Q |
| |
|
|||||||||||| | || ||||||||||| | |||||| || | |||| ||||| | ||| |||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
5594128 |
tttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaa |
5594029 |
T |
|
| Q |
195 |
gcaaaa |
200 |
Q |
| |
|
|||||| |
|
|
| T |
5594028 |
gcaaaa |
5594023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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