View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_low_4 (Length: 609)
Name: NF19379_low_4
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 37 - 594
Target Start/End: Complemental strand, 6289799 - 6289242
Alignment:
| Q |
37 |
atgcatatcaaatttcatacgtaccttgagttcgtagcgcctattaaagaaaaggcagatcccaaagtgtttgaagagcatatccttatcatcatagggc |
136 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6289799 |
atgcacatcaaatttcatacgtaccttgagttcgtagcgcctattaaagaaaaggcagatcccaaagtgtttgaagagcatatccttatcatcatagggc |
6289700 |
T |
|
| Q |
137 |
aaccttggaacaatgtcattgcaataaacaaacctacaataggttatacgattttccttcattttttgtgtcatatattgtgtatatctctcatctccaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6289699 |
aaccttggaacaatgtcattgcaataaacaaacctgcaataggttatacgattttccttcattttttgtgtcatatattgtgtatatctctcatctccaa |
6289600 |
T |
|
| Q |
237 |
ctcttggttgtccaaatgtgtaaatcccttccaacctctcaatcaacaatttctcatcatgtaagaacataattgttggaaaaagtattgctaatgcacc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6289599 |
ctcttggttgtccaaatgtgtaaatcccttccaacctctcaatcaacaatttctcatcatgtaagaacataattgttggaaaaagtattgctaatgcacc |
6289500 |
T |
|
| Q |
337 |
acccaaactatgacccgtaattataaactttgcattagggttttcactcaaaccttttcttagtatgtccctaataacataataggctagtggggcaagt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6289499 |
acccaaactatgacccgtaattataaactttgcattagggttttcactcaaaccttttcttagtatgtccctaataacataataggctagtggggcaagt |
6289400 |
T |
|
| Q |
437 |
ttttcatctctttcaatctctttaggccaacccaaattcttttgtagtcctagggctttcatgaatccaccgtgtgctcttccaacaccaggaatcccat |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6289399 |
ttttcatctctttcaatctctttaggccaacccaaattcttttgtagtcctagggctttcatgaatccaccgtgtgctcttccaacaccaggaatcccat |
6289300 |
T |
|
| Q |
537 |
accaagagatatcaagatcggtgcaccatgcatctgcatcaaagggttctgttcctct |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6289299 |
accaagagatatcaagatcggtgcaccatgcatctgcatcaaagggttctgttcctct |
6289242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University