View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19379_low_41 (Length: 373)
Name: NF19379_low_41
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 32728001 - 32727647
Alignment:
| Q |
15 |
agttagttgattggagggaaaaaataataagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaataagttgtaagctcgtaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
32728001 |
agttagttgattggagggaaaaaataacaagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaataatttgtaagctcgtaa |
32727902 |
T |
|
| Q |
115 |
gagaaaaacgttaccaagcaaatcatttttgacatatgcagttataagttataagttcaaaacctgacattatcaaattgagtcctgttttagttgctgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32727901 |
gagaaaaacgttaccaagcaaatcatttttgacatatgcagttataagttataagttcaaaacctgacattatcaaatcgagtcctgttttagttgctgt |
32727802 |
T |
|
| Q |
215 |
aatcaacggtgtcttgtaccatcaacttgtactaagagtggctagctgatgagtctgcc--atatgaatccaaatccaaacccttgggcatgcatttctg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
32727801 |
aatcaacggtgtcttgtaccatcaacttgtactaagagtggctagctgatgagtctgccatatatgaagccaaatccaaacccttgggcatgcatttctg |
32727702 |
T |
|
| Q |
313 |
atgattttaacatcaatcagataattattaacatcatcaactccgcctatgcttc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
32727701 |
atgattttaacatcaatcagataattattaacatcatcaactccgcttctgcttc |
32727647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 32725305 - 32725177
Alignment:
| Q |
92 |
aaaaataagttgtaagctcgtaagagaaaaacgttaccaagcaaatcatttttgacatatgcagttataagttataagttcaaaacctgacattatcaaa |
191 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||| ||||| |
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|
| T |
32725305 |
aaaaataa-ttgtaagctcctaagagaaaaacgttaccaagcaaatcatttttga---------taataagctataagttcaaaatctgacattttcaaa |
32725216 |
T |
|
| Q |
192 |
ttgagtcctgttttagtt-gctgtaatcaacggtgtcttgt |
231 |
Q |
| |
|
| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
32725215 |
t--agtcttgttttagttggctgtaatcaacggtgtcttgt |
32725177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 25129943 - 25130032
Alignment:
| Q |
42 |
taagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaataagttgtaagctcgtaagagaaaaacgttaccaa |
131 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||| || || |||||||||| |||||||||||||| | | ||||| |||||||| |
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|
| T |
25129943 |
taagctattagctaattgaatttgcttatcaaaataagttataagttagtaaaaatgagttgtaagctcgtgacaaaaaaaggttaccaa |
25130032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 28735577 - 28735641
Alignment:
| Q |
49 |
taagctaattgaataaacttatcaaaataagctacaaactagtaaaaataagttgtaagctcgta |
113 |
Q |
| |
|
|||| |||| |||| || ||||||||||| | || || |||||||||||||||| |||||||||| |
|
|
| T |
28735577 |
taagttaatggaattaatttatcaaaatatgttataacctagtaaaaataagttataagctcgta |
28735641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 36021124 - 36021060
Alignment:
| Q |
50 |
aagctaattgaataaacttatcaaaataagctacaaactagtaaaaataagttgtaagctcgtaa |
114 |
Q |
| |
|
||||||||||||| | |||||||||||||| || || |||||||||||||| | ||||||||||| |
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|
| T |
36021124 |
aagctaattgaattagcttatcaaaataagttataagctagtaaaaataagctataagctcgtaa |
36021060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 36423100 - 36423156
Alignment:
| Q |
66 |
cttatcaaaataagctacaaactagtaaaaataagttgtaagctcgtaagagaaaaa |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
36423100 |
cttatcaaaataagctacatgctagtaaaaataagttataagctcgtgagaggaaaa |
36423156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 35926674 - 35926744
Alignment:
| Q |
42 |
taagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaataagttgtaagctcgt |
112 |
Q |
| |
|
|||| ||||||||| |||||| | |||||||||| | |||||| |||||||||||||| | ||||||||| |
|
|
| T |
35926674 |
taagctataagctacttgaatcagcttatcaaaaaacactacaagctagtaaaaataagctataagctcgt |
35926744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 34425709 - 34425641
Alignment:
| Q |
34 |
aaaaataataagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaataagtt |
102 |
Q |
| |
|
|||||| ||||| |||||| ||||||||| |||||| |||||||| || | || |||||||||||||| |
|
|
| T |
34425709 |
aaaaatgataagctataagttaattgaatttacttataaaaataagttatacaccagtaaaaataagtt |
34425641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 42706349 - 42706397
Alignment:
| Q |
52 |
gctaattgaataaacttatcaaaataagctacaaactagtaaaaataag |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||| || |||||||| ||||| |
|
|
| T |
42706349 |
gctaattgaattagcttatcaaaataagctataatctagtaaatataag |
42706397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 29861418 - 29861352
Alignment:
| Q |
34 |
aaaaataataagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaataag |
100 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| | |||||||||||| |||| |||||||||||||||| |
|
|
| T |
29861418 |
aaaaatgataagctataagctaattcaattagcttatcaaaatacgctatgaactagtaaaaataag |
29861352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 28215246 - 28215191
Alignment:
| Q |
33 |
aaaaaataataagttataagctaattgaataaacttatcaaaataagctacaaact |
88 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
28215246 |
aaaaaaaattaaattataagctaattgaataaacatatcaaaataagttaaaaact |
28215191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 5946672 - 5946737
Alignment:
| Q |
32 |
gaaaaaataataagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaat |
97 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||| ||||||||| || | ||||||||||| |
|
|
| T |
5946672 |
gaaaaagtaataagctataagctaattgaattaacttaacaaaataagatattagctagtaaaaat |
5946737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 10911650 - 10911600
Alignment:
| Q |
32 |
gaaaaaataataagttataagctaattgaataaacttatcaaaataagcta |
82 |
Q |
| |
|
|||||||| ||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
10911650 |
gaaaaaatgttaagttataagctaattgatttagcttatcaaaataagcta |
10911600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 12359861 - 12359923
Alignment:
| Q |
37 |
aataataagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaataa |
99 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||| | | || || ||||||||||||| |
|
|
| T |
12359861 |
aataataagttataaactacttgaattaacttatcaaaaaatgttataagctagtaaaaataa |
12359923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 16869944 - 16870011
Alignment:
| Q |
33 |
aaaaaataataagttataagctaattgaataaacttatcaaaataagctacaaactagtaaaaataag |
100 |
Q |
| |
|
||||||| ||||| ||||||||| |||||| | |||||||||| | |||| || |||||||||||||| |
|
|
| T |
16869944 |
aaaaaatgataagctataagctacttgaattagcttatcaaaaaacgctataagctagtaaaaataag |
16870011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 27611953 - 27612004
Alignment:
| Q |
66 |
cttatcaaaataagctacaaactagt-aaaaataagttgtaagctcgtaaga |
116 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||| ||||||||||||||||| |
|
|
| T |
27611953 |
cttatcaaaataagctataagctagtaaaaaataggttgtaagctcgtaaga |
27612004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 8014706 - 8014746
Alignment:
| Q |
41 |
ataagttataagctaattgaataaacttatcaaaataagct |
81 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
8014706 |
ataagctataagctaattgaattagcttatcaaaataagct |
8014746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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