View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_44 (Length: 362)
Name: NF19379_low_44
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 35363497 - 35363833
Alignment:
| Q |
10 |
tcataggaagagatataggagctttttgctttgcatccaacccttcagcaagtccagcatagtactcaaaacaaccaataacaccgccctagataatcat |
109 |
Q |
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| T |
35363497 |
tcataggaagagatataggagctttttgctttgtatccaatccttcagcaagtccagcatagtactcaaaacaaccaataacaccgccctagataatcat |
35363596 |
T |
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| Q |
110 |
caaaccacaacaggtcccaagtaagcaaaaaatgcaacatgttttttcaatgacaaatattcaaatgctactaattaccatgtcccctagtgcttcatcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35363597 |
caaaccacaacaggtcccaagtaagcaaaaaatgcaacatgttttttcaatgacaaatattcaaatgctactaattaccatgtcccctagtgcttcatcc |
35363696 |
T |
|
| Q |
210 |
aatggttttccacaatcaattgattccagttttcctagttcattctttttctcagttacctgtgataaaggaatagaaaaaggacaactagtcaggtctc |
309 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
35363697 |
aatggttttccacaatcaattgattccagtttgcctagttcattctttttctcagttacctgtgataaaggaaaagaaaaaggataactagtcaggtctc |
35363796 |
T |
|
| Q |
310 |
aatacaagcacaactagatcagtcaaatagtaaattt |
346 |
Q |
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| T |
35363797 |
aagacaagcacaactagatcagtcaaagagtaaattt |
35363833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 344
Target Start/End: Complemental strand, 35383235 - 35383072
Alignment:
| Q |
181 |
taattaccatgtcccctagtgcttcatccaatggttttccacaatcaattgattccagttttcctagttcattctttttctcagttacctgtgataaagg |
280 |
Q |
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||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||| || || ||||||||||||||||||||||||| |||||| || || |
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| T |
35383235 |
taattaccagatccgctagtgcttcatccagtggctttccacaatcaattgattcaagcttgcctagttcattctttttctcagttatctgtgagaatgg |
35383136 |
T |
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| Q |
281 |
aatagaaaaaggacaactagtcaggtctcaatacaagcacaactagatcagtcaaatagtaaat |
344 |
Q |
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|| |||||||||||||| | |||||||| || ||| |||||||| || | ||||| ||||||| |
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| T |
35383135 |
aaaagaaaaaggacaaccaatcaggtctgaagacatacacaactacattaatcaaacagtaaat |
35383072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 35383405 - 35383324
Alignment:
| Q |
11 |
cataggaagagatataggagctttttgctttgcatccaacccttcagcaagtccagcatagtactcaaaacaaccaataaca |
92 |
Q |
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||||||||| |||| |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
35383405 |
cataggaagggatacaggagccttttgctttgcatctaacccttcagcaagcccagcatagtactcaaaacaactaataaca |
35383324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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