View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_low_45 (Length: 361)

Name: NF19379_low_45
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_low_45
NF19379_low_45
[»] chr4 (12 HSPs)
chr4 (64-361)||(35106916-35107214)
chr4 (99-361)||(35072682-35072944)
chr4 (99-361)||(35097738-35098000)
chr4 (99-351)||(35098037-35098289)
chr4 (100-361)||(36940478-36940739)
chr4 (152-361)||(36296508-36296717)
chr4 (140-346)||(36961300-36961507)
chr4 (98-213)||(36935858-36935974)
chr4 (299-361)||(36935979-36936041)
chr4 (25-65)||(35107235-35107275)
chr4 (222-354)||(35071965-35072097)
chr4 (176-224)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (97-361)||(24040736-24041000)
chr6 (99-361)||(24014181-24014443)
[»] chr1 (1 HSPs)
chr1 (265-361)||(3123129-3123225)
[»] chr5 (2 HSPs)
chr5 (140-234)||(34919141-34919235)
chr5 (125-361)||(26579013-26579249)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 64 - 361
Target Start/End: Complemental strand, 35107214 - 35106916
Alignment:
Q  64 aaacaaaagacgagtaacaaagcttgttctgagtt-aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagt 162  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  35107214 aaacaaaagacgagtaacaaagcttgttctgagtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagc 35107115  T
Q  163 gagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacga 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107114 gagaacaccattctccatagcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacga 35107015  T
Q  263 tgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107014 tgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 35106916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 99 - 361
Target Start/End: Original strand, 35072682 - 35072944
Alignment:
Q  99 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 198  Q
    ||||||||||||| ||||  || |  ||||| ||||| |  ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 35072781  T
Q  199 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 298  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35072782 cattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttc 35072881  T
Q  299 ctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35072882 ctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 35072944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 99 - 361
Target Start/End: Complemental strand, 35098000 - 35097738
Alignment:
Q  99 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 198  Q
    ||||||||||||||||||  || |  |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35098000 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35097901  T
Q  199 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 298  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  35097900 cattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattc 35097801  T
Q  299 ctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  35097800 ctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttc 35097738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 99 - 351
Target Start/End: Complemental strand, 35098289 - 35098037
Alignment:
Q  99 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 198  Q
    ||||||||||||||||||  || |  |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35098289 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35098190  T
Q  199 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 298  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  35098189 cattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattc 35098090  T
Q  299 ctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttc 351  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  35098089 ctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttc 35098037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 100 - 361
Target Start/End: Original strand, 36940478 - 36940739
Alignment:
Q  100 accagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatcc 199  Q
    ||||||||| ||||||| ||| | |||| | |||||||||||||  ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  200 attttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcc 299  Q
    ||||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||||||||| |||||| | |    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacgcttc 36940677  T
Q  300 tctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    | |  || ||||||||||||||||||||||||||||| || || ||| ||||||||||||||    
T  36940678 tttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttc 36940739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 152 - 361
Target Start/End: Original strand, 36296508 - 36296717
Alignment:
Q  152 acagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctac 251  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||||    
T  36296508 acagttacagtgagaacaccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctac 36296607  T
Q  252 gctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttc 351  Q
    ||||||| ||||||||||| |  ||||| |||||||| |||||||||||||| || || ||||||||||| || ||||||||||||||||||||||||||    
T  36296608 gctccacgcgatgccattggttgttcttgtcttctttctcaacgttcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttc 36296707  T
Q  352 ctccttcttc 361  Q
     |||||||||    
T  36296708 ttccttcttc 36296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 140 - 346
Target Start/End: Complemental strand, 36961507 - 36961300
Alignment:
Q  140 tcttccttagggacagtgacagtgagaacaccattctccattgca-gctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaat 238  Q
    ||||||||||| | ||| |||||||||||||||||||||  ||   || ||||| |||||||| || ||||||||||  ||||||||| |||||||||||    
T  36961507 tcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatccatcttagcattctctgccaatctaaacttcctcatgaat 36961408  T
Q  239 tttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaaccctatcatcttcaattt 338  Q
    || ||||||||| ||||||| | |||||||| ||  |||||||||||||| |||||| | ||||| ||||| |||||||||||||||||| ||||||| |    
T  36961407 ttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacgcttctctctccgctgatctgaagaaccctatcaacttcaatct 36961308  T
Q  339 caaccttc 346  Q
    | ||||||    
T  36961307 ctaccttc 36961300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 36935858 - 36935974
Alignment:
Q  98 taaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctcca-ttgcagctttcacttga 196  Q
    ||||||||||| |||||||  || | |||||||||||| | |||||| |  || || || |||||||||||||||||||||| |||||||||||||||||    
T  36935858 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttga 36935957  T
Q  197 tccattttcgcattctc 213  Q
    |||||||| ||||||||    
T  36935958 tccattttagcattctc 36935974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 36935979 - 36936041
Alignment:
Q  299 ctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    ||||| |||||||||||||||||| ||||||||||||| || || ||||||||||||||||||    
T  36935979 ctctctccgcttatctgaagaaccatatcatcttcaatctctactttcacttcctccttcttc 36936041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 35107275 - 35107235
Alignment:
Q  25 cttgcacagacatcacaaacaaagtaagcattacaaaacaa 65  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35107275 cttgcacagacatcacaaacaaagtaagcattacaaaacaa 35107235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 354
Target Start/End: Original strand, 35071965 - 35072097
Alignment:
Q  222 taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaac 321  Q
    |||| |||||||||||||| ||||| |||||||| ||||| || |||  ||||||  |||||| | | || | | ||||||| ||  |||||||||| ||    
T  35071965 taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac 35072064  T
Q  322 cctatcatcttcaatttcaaccttcacttcctc 354  Q
     ||  |||||||||  ||||| |||||||||||    
T  35072065 tcttccatcttcaacctcaactttcacttcctc 35072097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 36953720 - 36953768
Alignment:
Q  176 tccattgcagctttcacttgatccattttcgcattctctggtaatctaa 224  Q
    |||||||||||||||||||||||| |||| ||||| || || |||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatctaa 36953768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 97 - 361
Target Start/End: Original strand, 24040736 - 24041000
Alignment:
Q  97 ttaaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttga 196  Q
    |||||||||||| |||||||  || | || ||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24040736 ttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttga 24040835  T
Q  197 tccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040836 tccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgt 24040935  T
Q  297 tcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24040936 tcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcttccttcttc 24041000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 99 - 361
Target Start/End: Original strand, 24014181 - 24014443
Alignment:
Q  99 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 198  Q
    ||||||||||||| ||||  || |  ||||| ||||| |  ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 24014280  T
Q  199 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 298  Q
    |||||||||||| || || || || || ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  24014281 cattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaacattc 24014380  T
Q  299 ctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24014381 ctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttc 24014443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 361
Target Start/End: Complemental strand, 3123225 - 3123129
Alignment:
Q  265 ccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    |||| |||| ||||| |||||||| |||||| |||| || |||||||||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  3123225 ccatcgatcgttcttgtcttctttctcaacggtcctttctccgcttatctgaagaaccttatcatcttcaatttcaaccttcacctcttccttcttc 3123129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 34919235 - 34919141
Alignment:
Q  140 tcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcat 234  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||  ||||||| || |||||||||||  ||||||| || || ||||||||||||||    
T  34919235 tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcat 34919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 361
Target Start/End: Complemental strand, 26579249 - 26579013
Alignment:
Q  125 tcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaa 224  Q
    ||||||||||| | |||  ||||||| ||| | ||||| || ||||||||||||||  |||||||||| | |||||  || |||||||| || || ||||    
T  26579249 tcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggcaacctaa 26579150  T
Q  225 acctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaaccct 324  Q
    ||| ||  |  ||  ||||   ||| || || || ||||||||   ||||||||| ||||| || ||||  |||||||| || |||||||  | ||| |     
T  26579149 accgccggagaaaacttccctggcttcgttcaacgcgatgccaggtatcattcttgtcttccttctcaattttcctctctccacttatcttcaaaacacg 26579050  T
Q  325 atcatcttcaatttcaaccttcacttcctccttcttc 361  Q
    ||| |||||||| ||||||||||||||||||||||||    
T  26579049 atcctcttcaatctcaaccttcacttcctccttcttc 26579013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University