View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_47 (Length: 357)
Name: NF19379_low_47
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 3803456 - 3803130
Alignment:
| Q |
15 |
gacattgaaagacgggaatgaatccgggaaccaatggcggctttgtactgtaacacaagttgaggaagccaaatgtgtgttgagaatgataccggtttgg |
114 |
Q |
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| T |
3803456 |
gacattgaaagacgggaatgaatccgggaaccaatggcggctttgtactgtaactcaagtagaggaagccaaatgtgtgttgagaatgataccggtttgg |
3803357 |
T |
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| Q |
115 |
ctatgcactattatttactctgttgtatttacacaaatggcttctctttttgtcgaacaaggcgatgtaatgaacaacaaggtacgaaagtttcacttgc |
214 |
Q |
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| T |
3803356 |
ctatgcactattatttactctgttgtatttacacaaatggcttctctttttgtcgaacaaggcgatgcaatgaacaacaaggtacgaaagtttcacttac |
3803257 |
T |
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| Q |
215 |
cagctgcaaccatgtctgtgtttgatataggtagtgtccttgtatgtactggactttatcgccaagttcttgttcccctggccggaaaattaagcggtaa |
314 |
Q |
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| T |
3803256 |
cagctgcaaccatgtctgtgtttgatataggtagtgtccttgtatgtactggactttatcgccaagttcttgttcccttggccggaaaattaagcggtaa |
3803157 |
T |
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| Q |
315 |
tcctaaggggttaagcgaacttcaaag |
341 |
Q |
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| T |
3803156 |
tcctaaggggttaagtgaacttcaaag |
3803130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 341
Target Start/End: Original strand, 397335 - 397654
Alignment:
| Q |
22 |
aaagacgggaatgaatccgggaaccaatggcggctttgtactgtaacacaagttgaggaagccaaatgtgtgttgagaatgataccggtttggctatgca |
121 |
Q |
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| T |
397335 |
aaagacgggaatgaatccgggaaccaatggcgactttgcactgtaactcaagttgaggaagccaaatgtgtgttgagaatgataccagtttggctgtgca |
397434 |
T |
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| Q |
122 |
ctattatttactctgttgtatttacacaaatggcttctctttttgtcgaacaaggcgatgtaatgaacaacaaggtacgaaagtttcacttgccagctgc |
221 |
Q |
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| T |
397435 |
ctattatttactctgttgtattcacacaaatggcttctctttttgtcgaacaaggtgatgtaatgaacaacaaggtaggaaaatttcacttgccagcagc |
397534 |
T |
|
| Q |
222 |
aaccatgtctgtgtttgatataggtagtgtccttgtatgtactggactttatcgccaagttcttgttcccctggccggaaaattaagcggtaatcctaag |
321 |
Q |
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|||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
397535 |
aaccatgtctgtgtttgatatatgcagtgtccttgtatgcactggactttatcgccaagttctagttcccttggccggaaaattaagcggtaatcctaag |
397634 |
T |
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| Q |
322 |
gggttaagcgaacttcaaag |
341 |
Q |
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| T |
397635 |
gggttaagcgaacttcaaag |
397654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 52810042 - 52809923
Alignment:
| Q |
70 |
caagttgaggaagccaaatgtgtgttgagaatgataccggtttggctatgcactattatttactctgttgtatttacacaaatggcttctctttttgtcg |
169 |
Q |
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|||||||||||| | ||||| ||||| |||||| | || ||||||||||||| ||| ||||||||||||||||||||||||||| || || ||||| | |
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| T |
52810042 |
caagttgaggaaacaaaatgcgtgttaagaatgcttccaatttggctatgcaccatttgttactctgttgtatttacacaaatggcatcactatttgttg |
52809943 |
T |
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| Q |
170 |
aacaaggcgatgtaatgaac |
189 |
Q |
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| T |
52809942 |
agcaaggggatgtgatgaac |
52809923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 4708829 - 4708758
Alignment:
| Q |
110 |
tttggctatgcactattatttactctgttgtatttacacaaatggcttctctttttgtcgaacaaggcgatg |
181 |
Q |
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||||||| ||||| || || |||||||| || || ||||||||||||||||||||||| || ||||| |||| |
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| T |
4708829 |
tttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatg |
4708758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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