View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_48 (Length: 344)
Name: NF19379_low_48
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 7175434 - 7175746
Alignment:
| Q |
13 |
caaaggaataataaaaaatagataacagattaaaacaaattttggattaaagataaatgaagaaaagtataattaaacctatatttttaaactgcagtaa |
112 |
Q |
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| T |
7175434 |
caaaggaataataaaaaatagataagagattagaacaaattttggattaaagataaatgaagaaaagtataattaaacctatatttttaaactgcagtaa |
7175533 |
T |
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| Q |
113 |
aaatcgaatttagaataaatagcatgcttatatctttcgaaagcaacaagtacttgtagtctagtaatgtgggaatacattttgtcactcattcgttcat |
212 |
Q |
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| T |
7175534 |
aaatcgaatttagaataaatagcatgcttatatcttccgaaagcaacaagtacttgtagtctagtaatgtgggaatacattttgtcactcattcgttcaa |
7175633 |
T |
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| Q |
213 |
actacagaaaatctaaaatacatagaagcaacataaaccnnnnnnnnnnnnngagtgctagatattatcaaacattattgaagttggattctcccaacct |
312 |
Q |
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| T |
7175634 |
actacagaaaatctaaaatacatagaagcaacataaaccgaaaaaagaaaaagagtgctagatattatcaaacattattgaagttggattctcccaactt |
7175733 |
T |
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| Q |
313 |
ttataaaacaaat |
325 |
Q |
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| T |
7175734 |
ttataaaacaaat |
7175746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 7187034 - 7187193
Alignment:
| Q |
77 |
aagtataattaaacctatatttttaaactgcagtaaaaatcgaatttagaat--aaatagcatgcttatatctttcgaaagcaacaagtacttgtagtct |
174 |
Q |
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|||||||||||||||||| |||||| ||||| || | |||| |||||||| | ||| |||||||||||||||||||| |||||||||||||| |||| |
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| T |
7187034 |
aagtataattaaacctattagtttaaagtgcaggaatattcga-tttagaatggagatatcatgcttatatctttcgaaaacaacaagtacttgttgtct |
7187132 |
T |
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| Q |
175 |
agtaatgtgggaatacattttg--tcactcattcg-ttcatactacagaaaatctaaaata |
232 |
Q |
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||| ||||||||||| ||| | |||||||||| ||||||||| |||||||||||||| |
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| T |
7187133 |
agttatgtgggaataaattcagccccactcattcgtttcatactattgaaaatctaaaata |
7187193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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