View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_5 (Length: 598)
Name: NF19379_low_5
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_5 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 40200561 - 40199980
Alignment:
| Q |
1 |
tatatgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatccaatggcagcccccacaagattgagatactgaactatccc |
100 |
Q |
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| T |
40200561 |
tatatgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatccaatggcagcccccgcaagattgagatactgaactatccc |
40200462 |
T |
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| Q |
101 |
acataacgtgacttgaaaaccacctgaacaaacataaacacaagaacaaaagtaaatattttgttgttctcgtgtgctacaagttattgtgtgcttctag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40200461 |
acataacgtgacttgaaaaccacctgaacaaacataaacacaagaacaaaagtaaatattttgttgttctcgtgtactacaagttattgtgtgcttctag |
40200362 |
T |
|
| Q |
201 |
aagattgtttgttgtcggttaatgtatatcgtgggcttcaagttattttcagaaagatttggttcaaatatattttgtggacagctaatgactatggaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40200361 |
aagattgtttgttgtcggttaatgtatatcgtgggcttcaagttatttttagaaagatttggttcaaatatattttgtggacagctaatgactatggaag |
40200262 |
T |
|
| Q |
301 |
gaggctcaaccctaataacaagatatgaaatcaatatcgaagatcagagtttttagggtttcgtcttttatttgtataccactctagcaccgccattgat |
400 |
Q |
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| T |
40200261 |
gaggctcaaccctaataacaagatatgaaatcaatatcgaagatcagagtttttagggtttcgtcttttatttgtataccactctagcaccgccattgat |
40200162 |
T |
|
| Q |
401 |
cttccaaaggcttagagttggtttgttttagttgagttgtaattcatcttttcatactgtgattgtatcgatcactatggtgagtgaatgagagaaagtg |
500 |
Q |
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| T |
40200161 |
cttccaaaggcttagagttggtttgttttagttgagttgtaattcatcttttcatactgtgattgtatcgatcactatggtgagtgattgagagaaagtg |
40200062 |
T |
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| Q |
501 |
agagtgattaacaaatttagggggagacctaaatagaacgacacgggtagtattaggtgagaaagctttgaacaaggtttgt |
582 |
Q |
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| T |
40200061 |
agagtgattcacaaatttagggggagacctaaatagaacgacacgggtagtattaggtgagaaagctttgaacaaggtttgt |
40199980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 40208192 - 40208035
Alignment:
| Q |
4 |
atgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatccaatggcagcccccacaagattgagatactgaactatcccaca |
103 |
Q |
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| T |
40208192 |
atgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatccaatggcaactcctacaaggtttagatactgaactatcccaca |
40208093 |
T |
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| Q |
104 |
taacgtgacttgaaaaccacctgaacaaacataaacacaagaacaaaagtaaatattt |
161 |
Q |
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| T |
40208092 |
taacgtgacttgaaaaccacctaaacaaacataaacacaaaaacaaaagtaaacattt |
40208035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 40204040 - 40203900
Alignment:
| Q |
22 |
aaacttacatcatgcttatggcagaagctatagtgtatccaatggcagcccccacaagattgagatactgaactatcccacataacgtgacttgaaaacc |
121 |
Q |
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| T |
40204040 |
aaacttacatcatgcttatggctgaggctatagtgtatccaatggcaactccaacaaggttgagatactgaactatcccacataacgtgacttgaaaacc |
40203941 |
T |
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| Q |
122 |
acctgaacaaacat-aaacacaagaacaaaagtaaatattt |
161 |
Q |
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| T |
40203940 |
acctgaacaaacataaaaaacaagaaaaaaagtaaatattt |
40203900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 373 - 581
Target Start/End: Complemental strand, 18969 - 18760
Alignment:
| Q |
373 |
tgtataccactctagcaccgccattgatcttccaaaggcttagagttggtttgttttagttgagttgtaattcatcttt--tcatactgtgattgtatcg |
470 |
Q |
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|||| |||||||||| | || ||||| || || ||| |||| |||||||||||| |||||||||||||||||||||||| ||||| | |||| ||| |
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| T |
18969 |
tgtacaccactctagaaacgtcattg-tcatcaaaacgcttggagttggtttgtgttagttgagttgtaattcatctttattcatatttgttttgtgtcg |
18871 |
T |
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| Q |
471 |
atcactatggtgagtgaatgagagaaagtgagagtgattaacaaatttagggggagacctaaatagaacgacacgggtagtattaggtgagaaagctttg |
570 |
Q |
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| T |
18870 |
attactatggtgagtgattgagagaaagtgagagggattctcatatttaggaggagacctagatagaaagtcacgggttgtattgggtgaaaaggctttg |
18771 |
T |
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| Q |
571 |
aacaaggtttg |
581 |
Q |
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||||||||||| |
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| T |
18770 |
aacaaggtttg |
18760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 3323126 - 3323014
Alignment:
| Q |
164 |
ttgttctcgtgtgctacaagttattgtgtgcttctagaagattgtttgttgtcggttaatgtatatcgtgggcttcaagttattttcagaaagatttggt |
263 |
Q |
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|||||| ||||| |||||||||| |||| ||||||||| ||||| ||| |||||||| |||||||||||| ||||||||||||||||||||| ||||| | |
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| T |
3323126 |
ttgttcgcgtgtactacaagttactgtgggcttctagatgattgattgatgtcggtttatgtatatcgtgcgcttcaagttattttcagaaaaatttgtt |
3323027 |
T |
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| Q |
264 |
tcaaatatatttt |
276 |
Q |
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||||||||||||| |
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| T |
3323026 |
tcaaatatatttt |
3323014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 373 - 560
Target Start/End: Complemental strand, 3322867 - 3322680
Alignment:
| Q |
373 |
tgtataccactctagcaccgccattgatcttccaaaggcttagagttggtttgttttagttgagttgtaattcatct---tttcatactgtgattgtatc |
469 |
Q |
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|||||||||||||||| ||||||||||| || ||||||||||||| ||| |||||||| ||||||||||||| ||| ||| |||||| || |
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| T |
3322867 |
tgtataccactctagcgccgccattgattatcaaaaggcttagagta----tgtgttagttgaattgtaattcatctctatttgtaactatgattgagtc |
3322772 |
T |
|
| Q |
470 |
gatcactatggtgagtgaatgagagaaagtgagag-tgattaacaaatttagggggagacctaaatagaacgacacgggtagtattaggtga |
560 |
Q |
| |
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|||| |||||||||||| |||||||||||||||| | || || ||| ||||| || |||| |||||| ||||||||||||| |||||| |
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| T |
3322771 |
aatcagtatggtgagtgattgagagaaagtgagagaggtttctcatattcaggggaagtcctagatagaaatacacgggtagtataaggtga |
3322680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 441
Target Start/End: Original strand, 13280892 - 13280922
Alignment:
| Q |
411 |
cttagagttggtttgttttagttgagttgta |
441 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
13280892 |
cttagagttggtttgttttagttgagttgta |
13280922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 28013601 - 28013522
Alignment:
| Q |
371 |
tttgtataccactctagcaccgccattgatct-tccaaaggcttagagttggtttgttttagttgagttgtaattcatct |
449 |
Q |
| |
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|||||| |||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28013601 |
tttgtacaccactttagcaccgccattgatcaatcaaaagacttagagttggtttgttttagttgagttgtaattcatct |
28013522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 9375639 - 9375684
Alignment:
| Q |
515 |
atttagggggagacctaaatagaacgacacgggtagtattaggtga |
560 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
9375639 |
atttaaggggagacctaaatagaaatacacgggtagtattaggtga |
9375684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 35656226 - 35656174
Alignment:
| Q |
405 |
caaaggcttagagttggtttgttttagttgagttgtaattcatcttttcatac |
457 |
Q |
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|||| ||||||| ||||||| ||||||||||||||||||| |||||| |||| |
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| T |
35656226 |
caaaagcttagaattggtttattttagttgagttgtaatttgtctttttatac |
35656174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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