View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_low_53 (Length: 324)

Name: NF19379_low_53
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_low_53
NF19379_low_53
[»] chr2 (12 HSPs)
chr2 (12-306)||(15925283-15925581)
chr2 (172-307)||(30257809-30257940)
chr2 (152-281)||(5163742-5163869)
chr2 (243-307)||(36186639-36186700)
chr2 (202-284)||(40876974-40877054)
chr2 (164-218)||(16647947-16648001)
chr2 (245-284)||(38134112-38134151)
chr2 (142-216)||(2887142-2887216)
chr2 (243-280)||(6621358-6621395)
chr2 (239-284)||(16647008-16647053)
chr2 (202-290)||(28556649-28556734)
chr2 (152-188)||(14951599-14951635)
[»] chr8 (12 HSPs)
chr8 (155-307)||(26835623-26835770)
chr8 (182-284)||(13580407-13580507)
chr8 (176-285)||(22930295-22930402)
chr8 (238-307)||(13236216-13236282)
chr8 (237-284)||(17786557-17786604)
chr8 (238-284)||(34142058-34142104)
chr8 (243-284)||(32036788-32036829)
chr8 (202-272)||(28376657-28376725)
chr8 (170-304)||(9191168-9191291)
chr8 (243-285)||(28310231-28310273)
chr8 (181-284)||(4350717-4350821)
chr8 (243-288)||(26801891-26801936)
[»] chr6 (7 HSPs)
chr6 (181-306)||(12174299-12174419)
chr6 (202-284)||(9815721-9815801)
chr6 (176-284)||(10668928-10669033)
chr6 (240-284)||(31787851-31787895)
chr6 (164-284)||(13229269-13229388)
chr6 (238-284)||(34540909-34540955)
chr6 (243-307)||(34573215-34573276)
[»] chr7 (12 HSPs)
chr7 (181-290)||(35812593-35812700)
chr7 (175-284)||(21828134-21828241)
chr7 (204-284)||(3940700-3940778)
chr7 (183-284)||(26914392-26914490)
chr7 (142-284)||(9429385-9429525)
chr7 (203-285)||(32982336-32982416)
chr7 (238-279)||(26912361-26912402)
chr7 (243-283)||(3351119-3351159)
chr7 (225-284)||(42335994-42336053)
chr7 (163-221)||(30095870-30095928)
chr7 (239-284)||(21129376-21129421)
chr7 (239-284)||(33480539-33480584)
[»] chr5 (7 HSPs)
chr5 (200-307)||(502803-502902)
chr5 (185-307)||(16570525-16570642)
chr5 (200-307)||(32257714-32257816)
chr5 (239-284)||(3193571-3193616)
chr5 (238-307)||(18600221-18600287)
chr5 (243-284)||(7886661-7886702)
chr5 (242-290)||(3596956-3597003)
[»] chr1 (5 HSPs)
chr1 (164-305)||(1240389-1240529)
chr1 (153-284)||(8246769-8246896)
chr1 (226-307)||(33735779-33735857)
chr1 (238-285)||(35405370-35405417)
chr1 (202-269)||(3265529-3265594)
[»] chr4 (9 HSPs)
chr4 (182-281)||(12320383-12320481)
chr4 (239-279)||(50521290-50521330)
chr4 (175-307)||(23870020-23870147)
chr4 (203-307)||(36071586-36071685)
chr4 (238-284)||(3643194-3643240)
chr4 (225-279)||(40807924-40807978)
chr4 (239-284)||(2113874-2113919)
chr4 (249-285)||(5627536-5627572)
chr4 (142-307)||(7853235-7853395)
[»] scaffold0531 (1 HSPs)
scaffold0531 (196-281)||(9695-9778)
[»] chr3 (7 HSPs)
chr3 (203-284)||(15670919-15670998)
chr3 (238-284)||(19149899-19149945)
chr3 (239-306)||(33510127-33510191)
chr3 (237-284)||(39838500-39838547)
chr3 (239-284)||(27538834-27538879)
chr3 (239-284)||(33682711-33682756)
chr3 (252-288)||(47000910-47000946)
[»] scaffold0777 (1 HSPs)
scaffold0777 (239-284)||(5880-5925)
[»] scaffold0328 (1 HSPs)
scaffold0328 (252-288)||(4833-4869)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 15925283 - 15925581
Alignment:
Q  12 tatactcatcacattatgcgtactttttatgtgtctattataacattttgcaagtatgcctcttctatttnnnnnnntt-------tatgcattattttc 104  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        |       ||||||||||||||    
T  15925283 tatactcatcacattatgcgtactttttatgtgtctattata-cattttgcaagtatgcctcttctatttaaaaaaaataaaaaattatgcattattttc 15925381  T
Q  105 cttgacacatcacaatatacatcaaattgacccctgaggtggccataagggtgggtggaagggacggcaacccagagcaccatttctttagaggtatcaa 204  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| | ||||||||||||||||||||||| |||||||||| || || ||||||||    
T  15925382 cttgacacatcacaatatacatcaaattgaccca-gaggtggccataaag-tgggtggaagggacggcaacccaaagcaccattttttaaggggtatcaa 15925479  T
Q  205 aattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaact 304  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  15925480 aattattatttttactttgtattgtaagtattgtatagatatatttctttttaactcgctttaattaattatattgaaaaaaatatatttctagaaaact 15925579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 307
Target Start/End: Complemental strand, 30257940 - 30257809
Alignment:
Q  172 caacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagta-tagtatagatatatttctttttaactcgctttgatt 270  Q
    |||||||| ||||||||  |||| ||| |||||||||||| |||||||||   ||||| | || || |||||||||||||||||| || ||| |||||||    
T  30257940 caacccagggcaccattattttaaaggcatcaaaattattttttttactta--atagttaatactaatatagatatatttcttttcaattcggtttgatt 30257843  T
Q  271 aattatattgaaaaatatatatttctagagaactttg 307  Q
    |||||||||||||   |||||||| ||||||||||||    
T  30257842 aattatattgaaa---atatatttttagagaactttg 30257809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 5163742 - 5163869
Alignment:
Q  152 agggtgggtggaagggacggcaacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttc 251  Q
    |||||||| || ||||||| || || || |||| |||  ||||| || |||||||||||||||||||||| |||  || ||||   |||| |||||| ||    
T  5163742 agggtgggcgggagggacgacagcctagggcactattattttaggggcatcaaaattattatttttacttagta--gttagtactatataaatatatatc 5163839  T
Q  252 tttttaactcgctttgattaattatattga 281  Q
    ||||||| ||| ||||||||||||||||||    
T  5163840 tttttaattcggtttgattaattatattga 5163869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 36186700 - 36186639
Alignment:
Q  243 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttg 307  Q
    |||||||||||||||| || |||||||||||||||||||||   |||||||| ||||||||||||    
T  36186700 atatatttctttttaattctctttgattaattatattgaaa---atatatttttagagaactttg 36186639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 40877054 - 40876974
Alignment:
Q  202 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||||| |||  || |||||  |||| |||||||||||||||||| | || |||||||| |||||||||    
T  40877054 caaaattattatttttacttggta--gttagtattatataaatatatttctttttaacttgtttggattaattctattgaaaa 40876974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 16648001 - 16647947
Alignment:
Q  164 agggacggcaacccagagcaccatttctttagaggtatcaaaattattattttta 218  Q
    |||| ||||||||||| ||||||||| ||||| || |||||||||||||||||||    
T  16648001 aggggcggcaacccagggcaccatttttttaggggcatcaaaattattattttta 16647947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 38134112 - 38134151
Alignment:
Q  245 atatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  38134112 atatttctttttaactcgatttgattaattatattaaaaa 38134151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 2887216 - 2887142
Alignment:
Q  142 ggtggccataagggtgggtggaagggacggcaacccagagcaccatttctttagaggtatcaaaattattatttt 216  Q
    ||||||| | ||||||||||| |||| |||||| | || ||||||||  ||||| |||| |||||||||||||||    
T  2887216 ggtggccctgagggtgggtgggaggggcggcaatctagggcaccattattttaggggtaccaaaattattatttt 2887142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 6621358 - 6621395
Alignment:
Q  243 atatatttctttttaactcgctttgattaattatattg 280  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  6621358 atatatttctttttaactccctttgattaattttattg 6621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 16647053 - 16647008
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||||| | | ||||||||||| |||||||||    
T  16647053 atagatatatttctttttaatttgttttgattaattctattgaaaa 16647008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 28556734 - 28556649
Alignment:
Q  202 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatat 290  Q
    |||||||||||||||||||| |||  || ||||   |||||||| ||||| ||| || ||| |||||||||||||||| ||||||||||    
T  28556734 caaaattattatttttacttagta--gttagtactatatagatacatttcgtttaaattcggtttgattaattatatt-aaaaatatat 28556649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 14951599 - 14951635
Alignment:
Q  152 agggtgggtggaagggacggcaacccagagcaccatt 188  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  14951599 agggtgggtggaaggggcggcagcccagagcaccatt 14951635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 307
Target Start/End: Complemental strand, 26835770 - 26835623
Alignment:
Q  155 gtgggtggaagggacggcaacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttcttt 254  Q
    ||||||||||| | ||||| |||| |||||||||| ||||| || | ||||||||||||||||||||   ||||| |||| | |||| ||||||||||||    
T  26835770 gtgggtggaagaggcggcagcccatagcaccatttttttaggggcaccaaaattattatttttactt--aatagttagtacaatataaatatatttcttt 26835673  T
Q  255 ttaactcgctttgattaattatattgaaaaatatatatttctagagaactttg 307  Q
    |||| |  |||| ||||||| ||||||||   |||||||| ||||||||||||    
T  26835672 ttaattttcttttattaattctattgaaa---atatatttttagagaactttg 26835623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 13580507 - 13580407
Alignment:
Q  182 caccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattga 281  Q
    |||||||| ||||| || | ||||||||||||||||||||   ||||| |||||  |||| |||||||||||||||| ||||||||||||||| ||||||    
T  13580507 caccatttttttaggggcaccaaaattattatttttactta--atagttagtattatataaatatatttctttttaattcgctttgattaattctattga 13580410  T
Q  282 aaa 284  Q
    |||    
T  13580409 aaa 13580407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 22930295 - 22930402
Alignment:
Q  176 ccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaatta 275  Q
    |||| ||||||||| || || || | ||||||||| ||||||||||   ||||| ||||   ||||||||||| ||||||||| |||||||||||||||     
T  22930295 ccagggcaccattttttcaggggcaccaaaattataatttttactta--atagttagtactatatagatatatatctttttaattcgctttgattaattc 22930392  T
Q  276 tattgaaaaa 285  Q
    ||||||||||    
T  22930393 tattgaaaaa 22930402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 13236216 - 13236282
Alignment:
Q  238 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttg 307  Q
    |||| |||||||||||||||| ||||||||||||||| || |||||   |||||||| ||||||||||||    
T  13236216 tatatatatatttctttttaattcgctttgattaattctaatgaaa---atatatttttagagaactttg 13236282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 17786604 - 17786557
Alignment:
Q  237 gtatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  17786604 gtatacatatatttctttttaactcgctttgattaatcatattaaaaa 17786557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 34142058 - 34142104
Alignment:
Q  238 tatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||||||  |||||||||||||| |||||||||    
T  34142058 tatagatatatttctttttaatccgctttgattaattctattgaaaa 34142104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 32036788 - 32036829
Alignment:
Q  243 atatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  32036788 atatatttctttttaactcgtttggattaattatattgaaaa 32036829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 28376657 - 28376725
Alignment:
Q  202 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaa 272  Q
    |||||||||||||||||||| |||  || ||||   ||||||||||||||||||||| ||| |||||||||    
T  28376657 caaaattattatttttacttagta--gttagtactatatagatatatttctttttaattcgttttgattaa 28376725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 9191168 - 9191291
Alignment:
Q  170 ggcaacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgat 269  Q
    |||| |||||| |||||||| |||||  | |||||||||||||||||||||| |||  || |      ||||||||||||| ||||||| || |||||||    
T  9191168 ggcagcccagaacaccatttttttaggagcatcaaaattattatttttacttagta--gtta------tatagatatatttatttttaattcactttgat 9191259  T
Q  270 taattatattgaaaaatatatatttctagagaact 304  Q
    ||||| |||| |||   |||||||| |||||||||    
T  9191260 taattctattcaaa---atatatttttagagaact 9191291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 28310231 - 28310273
Alignment:
Q  243 atatatttctttttaactcgctttgattaattatattgaaaaa 285  Q
    ||||||| |||||||||||| ||||||||||| ||||||||||    
T  28310231 atatattactttttaactcgttttgattaattctattgaaaaa 28310273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 284
Target Start/End: Complemental strand, 4350821 - 4350717
Alignment:
Q  181 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagata---tatttctttttaactcgctttgattaattata 277  Q
    |||||| || |||||||| | ||||||||||||||||| || |  |||| |||||  ||||||||   ||||| ||||||| |||||||| |||||| ||    
T  4350821 gcaccacttttttagaggcaccaaaattattatttttatttag--tagttagtattatatagatatattatttttttttaattcgctttggttaattcta 4350724  T
Q  278 ttgaaaa 284  Q
    |||||||    
T  4350723 ttgaaaa 4350717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 26801891 - 26801936
Alignment:
Q  243 atatatttctttttaactcgctttgattaattatattgaaaaatat 288  Q
    ||||||||  ||||||||| ||||||||||||||||||||| ||||    
T  26801891 atatattttgttttaactcactttgattaattatattgaaatatat 26801936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 306
Target Start/End: Original strand, 12174299 - 12174419
Alignment:
Q  181 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 280  Q
    ||||||||| || ||||| | |||||||||||||||||||| |||  || ||||   ||||||||||||||||||||| ||| ||||||||||||||||     
T  12174299 gcaccattttttaagaggcaccaaaattattatttttacttagta--gttagtactatatagatatatttctttttaattcgttttgattaattatatt- 12174395  T
Q  281 aaaaatatatatttctagagaacttt 306  Q
      ||| |||||||| |||||||||||    
T  12174396 --aaaaatatatttttagagaacttt 12174419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 9815801 - 9815721
Alignment:
Q  202 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||||| |||  || | ||   ||||||||||||||||||||| ||||||||||||| | |||||||||    
T  9815801 caaaattattatttttacttagta--gttaatactatatagatatatttctttttaattcgctttgattaactttattgaaaa 9815721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 10669033 - 10668928
Alignment:
Q  176 ccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaatta 275  Q
    |||| ||||||||| ||||| || | ||||||||||||||||||||    |||| |||||  ||||||||||| |||||| || ||  ||||||||||||    
T  10669033 ccagggcaccatttttttaggggcaccaaaattattatttttactt--attagttagtattatatagatatatatcttttgaattc-atttgattaatta 10668937  T
Q  276 tattgaaaa 284  Q
    |||||||||    
T  10668936 tattgaaaa 10668928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 31787851 - 31787895
Alignment:
Q  240 tagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||    
T  31787851 tagatatatttatttttaattcgctttgattaattctattgaaaa 31787895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 13229269 - 13229388
Alignment:
Q  164 agggacggcaacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcg- 262  Q
    |||| ||||| ||||  ||||||||| |||||||| | |||||||||||||||||||| |  ||||  ||| | |||||| | |||||||||||| | |     
T  13229269 aggggcggcagcccaaggcaccatttttttagaggcaccaaaattattatttttacttag--tagtcggtacaatatagaaaaatttctttttaatttgt 13229366  T
Q  263 ctttgattaattatattgaaaa 284  Q
    | |||||||||| |||||||||    
T  13229367 ccttgattaattctattgaaaa 13229388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 34540955 - 34540909
Alignment:
Q  238 tatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||| |||||||| |||||||| || |||||||||    
T  34540955 tatagatatatttcttattaactcgttttgattagttctattgaaaa 34540909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 34573276 - 34573215
Alignment:
Q  243 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttg 307  Q
    |||||||||||||||| ||| ||||||||||| ||||||||   |||||||| || |||||||||    
T  34573276 atatatttctttttaattcggtttgattaattttattgaaa---atatatttttaaagaactttg 34573215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 290
Target Start/End: Original strand, 35812593 - 35812700
Alignment:
Q  181 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 280  Q
    ||||||||| ||||| || ||||||||||||||||||||||   ||| | ||||   ||||||||||||||||||||| |||||||||| |||| |||||    
T  35812593 gcaccatttttttaggggcatcaaaattattatttttactta--ataattagtactatatagatatatttctttttaattcgctttgatcaattctattg 35812690  T
Q  281 aaaaatatat 290  Q
    | ||||||||    
T  35812691 ataaatatat 35812700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 21828134 - 21828241
Alignment:
Q  175 cccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaatt 274  Q
    ||||| ||||||||||||||| || || |||||||||||||||||||   ||||| | || |  |||||||||||||||||||||| | ||||||||||     
T  21828134 cccagggcaccatttctttaggggcataaaaattattatttttactt--catagtcactacaaaatagatatatttctttttaacttgttttgattaatg 21828231  T
Q  275 atattgaaaa 284  Q
     |||||||||    
T  21828232 ctattgaaaa 21828241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 3940778 - 3940700
Alignment:
Q  204 aaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||| |||  ||||||||| ||||||||||||||||||||| |  |||||||||||| |||| ||||    
T  3940778 aaattattatttttacttagta--gtaagtataatatagatatatttctttttaatttactttgattaattctatttaaaa 3940700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 26914490 - 26914392
Alignment:
Q  183 accatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaa 282  Q
    ||||||| ||||| ||||||||||||||||||||||||| |  |||| |||||  |||| |||| |||  |||||| ||| |||||||||||||||||||    
T  26914490 accatttttttag-ggtatcaaaattattatttttacttag--tagttagtattatatacatatgtttacttttaattcgttttgattaattatattgaa 26914394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 284
Target Start/End: Complemental strand, 9429525 - 9429385
Alignment:
Q  142 ggtggccataagggtgggtggaagggacggcaacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtata 241  Q
    ||||||| | ||||||||  |||||||||  ||||||   || ||||| ||||| || | |||||||| |||||||| ||   ||||| |||||  ||||    
T  9429525 ggtggccctgagggtgggcagaagggacgataacccaagacatcatttttttaggggcaccaaaattagtatttttattta--atagttagtattatata 9429428  T
Q  242 gatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
     ||||||||||||||| |||| ||||||||||| |||||||||    
T  9429427 aatatatttctttttatctcgttttgattaattctattgaaaa 9429385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 32982336 - 32982416
Alignment:
Q  203 aaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaa 285  Q
    ||||||||||||||||||| |||  || || | |||||| |||||||| ||||||||||  ||||||||||| ||||||||||    
T  32982336 aaaattattatttttacttggta--gttaggagagtatacatatatttttttttaactcattttgattaattctattgaaaaa 32982416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 26912361 - 26912402
Alignment:
Q  238 tatagatatatttctttttaactcgctttgattaattatatt 279  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  26912361 tatagatatatttctttttaattcgctttgattaattctatt 26912402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 3351119 - 3351159
Alignment:
Q  243 atatatttctttttaactcgctttgattaattatattgaaa 283  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  3351119 atatatttctttttaattcgctttgattaattctattgaaa 3351159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 42336053 - 42335994
Alignment:
Q  225 atagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    ||||| |||||  ||||||||||||||||||||| ||| ||| |||||||||| ||||||    
T  42336053 atagttagtattatatagatatatttctttttaattcggtttaattaattatagtgaaaa 42335994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 30095928 - 30095870
Alignment:
Q  163 aagggacggcaacccagagcaccatttctttagaggtatcaaaattattatttttactt 221  Q
    ||||| ||||| ||||| ||||||||| ||||| || | ||||||||||||||||||||    
T  30095928 aaggggcggcagcccagggcaccatttttttaggggcaccaaaattattatttttactt 30095870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 21129421 - 21129376
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||||| | | ||||||||||| |||||||||    
T  21129421 atagatatatttctttttaatttggtttgattaattctattgaaaa 21129376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 33480584 - 33480539
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||| ||| | |||||||||||||||||| ||||    
T  33480584 atagatatatttctttctaaattgctttgattaattatattaaaaa 33480539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 502803 - 502902
Alignment:
Q  200 atcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctaga 299  Q
    |||||||||||||||||||||| |   ||| |||||  |||||||||||||||||||||||  |||||||||||| ||||||||   |||||||| ||||    
T  502803 atcaaaattattatttttacttag---agttagtattatatagatatatttctttttaact--ctttgattaattctattgaaa---atatatttttaga 502894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 307
Target Start/End: Complemental strand, 16570642 - 16570525
Alignment:
Q  185 catttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    ||||| |||||||| ||||||||||||||||||||||  ||  ||  |||   ||||||||||||||||||||| || |||||||||||| ||||   ||    
T  16570642 catttttttagaggcatcaaaattattatttttacttatta--gttggtaccatatagatatatttctttttaattcactttgattaattctatt---aa 16570548  T
Q  285 atatatatttctagagaactttg 307  Q
    | |||||||| ||||||||||||    
T  16570547 aaatatatttttagagaactttg 16570525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 32257816 - 32257714
Alignment:
Q  200 atcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctaga 299  Q
    |||||||| ||||||||||||| |||  || |||||   |||||||||||| ||||||| | ||||||||||||| ||||||||   ||||| || ||||    
T  32257816 atcaaaataattatttttacttagta--gttagtattacatagatatatttttttttaatttgctttgattaattttattgaaa---atatacttttaga 32257722  T
Q  300 gaactttg 307  Q
    ||||||||    
T  32257721 gaactttg 32257714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 3193616 - 3193571
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||    
T  3193616 atagatatatttctttttaaattgctttgaataattatattgaaaa 3193571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 18600221 - 18600287
Alignment:
Q  238 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttg 307  Q
    ||||||||| ||||||||| | ||| ||||||||||||||||||||   |||| ||| ||||||||||||    
T  18600221 tatagatatctttctttttgaatcgatttgattaattatattgaaa---atatgtttttagagaactttg 18600287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 7886702 - 7886661
Alignment:
Q  243 atatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||| ||||||||||| ||||||||||||||| |||||||||    
T  7886702 atatgtttctttttaattcgctttgattaattctattgaaaa 7886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 3597003 - 3596956
Alignment:
Q  242 gatatatttctttttaactcgctttgattaattatattgaaaaatatat 290  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||||||||||    
T  3597003 gatatatttctttttaattcgttttgattaattctatt-aaaaatatat 3596956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 1240389 - 1240529
Alignment:
Q  164 agggacggcaacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgc 263  Q
    |||| ||||| |||||  |||||||| ||||| || |  ||||||||||||||||||| |||  || ||||   |||| ||||||||||||||||  |||    
T  1240389 aggggcggcagcccaggacaccatttttttaggggcactaaaattattatttttacttagta--gttagtactatataaatatatttctttttaatccgc 1240486  T
Q  264 tttgattaattatattgaaaa-atatatatttctagagaactt 305  Q
    ||||||||||| ||||||||| |||| | ||| ||||||||||    
T  1240487 tttgattaattctattgaaaatatatttttttttagagaactt 1240529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 284
Target Start/End: Complemental strand, 8246896 - 8246769
Alignment:
Q  153 gggtgggtggaagggacggcaacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttct 252  Q
    ||||||| ||||||| |||||   ||| ||||||||| |||||  | | ||||||||||||||||||||   ||||| ||||   |||||||||||||||    
T  8246896 gggtgggcggaaggggcggcagttcagggcaccatttttttag--gcaccaaaattattatttttactta--atagttagtactatatagatatatttct 8246801  T
Q  253 ttttaactcgctttgattaattatattgaaaa 284  Q
    |||||| | | ||||||||||| |||||||||    
T  8246800 ttttaatttgatttgattaattctattgaaaa 8246769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 33735857 - 33735779
Alignment:
Q  226 tagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttg 307  Q
    |||| ||||| ||||| |||||||||||||||| | | ||||||||||||||||||||   |||||||| |||| |||||||    
T  33735857 tagttagtattgtataaatatatttctttttaatttggtttgattaattatattgaaa---atatatttttagacaactttg 33735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 35405370 - 35405417
Alignment:
Q  238 tatagatatatttctttttaactcgctttgattaattatattgaaaaa 285  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||||    
T  35405370 tatatatatatttctttttaattcgctttgattaattatatttaaaaa 35405417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 3265594 - 3265529
Alignment:
Q  202 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgat 269  Q
    ||||||||||||||||||||   ||||| |||||   ||||||||||||||||||||||| |||||||    
T  3265594 caaaattattatttttactta--atagttagtattaaatagatatatttctttttaactccctttgat 3265529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 12320383 - 12320481
Alignment:
Q  182 caccatttctttagaggtatcaaaattatta-tttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 280  Q
    |||||||  ||||| || || |||||||||| ||||||||| |||  || |||||| ||||||||||| ||||||||| ||| |||||||||||||||||    
T  12320383 caccattattttaggggcatgaaaattattactttttacttagta--gttagtataatatagatatatatctttttaattcggtttgattaattatattg 12320480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 50521330 - 50521290
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatatt 279  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  50521330 atagatatatttctttttaactcgttttgattaattatatt 50521290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 23870020 - 23870147
Alignment:
Q  175 cccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaatt 274  Q
    ||||| |||||| || ||||| || | |||||||||||||||||||| |||  || ||||   ||||||||||| | ||||||| ||| |||||||||||    
T  23870020 cccagggcaccacttttttaggggcaccaaaattattatttttacttagta--gttagtactatatagatatatatttttttaattcgttttgattaatt 23870117  T
Q  275 atattgaaaaatatatatttctagagaactttg 307  Q
     ||||||||   |||||||| |||| |||||||    
T  23870118 ctattgaaa---atatatttttagataactttg 23870147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 36071685 - 36071586
Alignment:
Q  203 aaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaa 302  Q
    |||||||||||||||||||   ||||| ||||   ||||||||||||||||||||| |  ||||||||||||  |||||||   |||||||| |||||||    
T  36071685 aaaattattatttttacttg--atagttagtactatatagatatatttctttttaattttctttgattaattcaattgaaa---atatatttttagagaa 36071591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 3643240 - 3643194
Alignment:
Q  238 tatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    ||||||||||||||||||||| | || ||||||||||||||||||||    
T  3643240 tatagatatatttctttttaatttgcattgattaattatattgaaaa 3643194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 40807978 - 40807924
Alignment:
Q  225 atagtaagtatagtatagatatatttctttttaactcgctttgattaattatatt 279  Q
    ||||| |||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  40807978 atagttagtattatatagatatatttctttttaattcgctttgattaattctatt 40807924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 2113874 - 2113919
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||    
T  2113874 atagatatatttctttctaaattgctttgattaattatattgaaaa 2113919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 5627536 - 5627572
Alignment:
Q  249 ttctttttaactcgctttgattaattatattgaaaaa 285  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  5627536 ttctttttaattcgttttgattaattatattgaaaaa 5627572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 7853235 - 7853395
Alignment:
Q  142 ggtggccataagggtgggtggaagggacggcaacccagagcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtata 241  Q
    ||||||| |||||||||| || || | |||||||| || ||| ||||   ||| ||| | |||| ||||||||||||||| |||  || ||||   ||||    
T  7853235 ggtggccctaagggtgggcgggagaggcggcaacctagggcatcattatcttacaggcaccaaatttattatttttacttagta--gttagtactatata 7853332  T
Q  242 gatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttg 307  Q
    ||||||| || |||||| ||  |||||||||| |||||||||   |||||||| |||| |||||||    
T  7853333 gatatatatccttttaattcagtttgattaatgatattgaaa---atatatttttagaaaactttg 7853395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 9695 - 9778
Alignment:
Q  196 aggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattga 281  Q
    ||||| ||||||||||||||||| || |||  || ||||   ||||||||||| ||||||||| ||| ||||||||||||||||||    
T  9695 aggtaccaaaattattatttttatttagta--gttagtactatatagatatatatctttttaattcggtttgattaattatattga 9778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 15670919 - 15670998
Alignment:
Q  203 aaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    ||||||||||||||||||| |||  || | || | ||||||||||||||||||||| | | ||||||||||| |||||||||    
T  15670919 aaaattattatttttacttagta--gttattacaatatagatatatttctttttaatttgttttgattaattctattgaaaa 15670998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 19149945 - 19149899
Alignment:
Q  238 tatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||    
T  19149945 tataaatatatttctttttaattcgctttgattaattatatcgaaaa 19149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 33510191 - 33510127
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaacttt 306  Q
    |||||||||||||||||||| ||| |||||||||||  |||||||   |||||||| |||||||||||    
T  33510191 atagatatatttctttttaattcgttttgattaattccattgaaa---atatatttttagagaacttt 33510127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 39838500 - 39838547
Alignment:
Q  237 gtatagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    ||||| |||||||||||||||||||  | |||||||||||||||||||    
T  39838500 gtataaatatatttctttttaactcattatgattaattatattgaaaa 39838547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 27538879 - 27538834
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||| ||||||| || |||||||||||| |||||||||    
T  27538879 atagatatatttatttttaattctctttgattaattctattgaaaa 27538834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 33682756 - 33682711
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||||||| || |||||||||||| |||| ||||    
T  33682756 atagatatatttctttttaattcactttgattaattctattaaaaa 33682711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 47000946 - 47000910
Alignment:
Q  252 tttttaactcgctttgattaattatattgaaaaatat 288  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  47000946 tttttaattcgctttgattaattctattgaaaaatat 47000910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 5880 - 5925
Alignment:
Q  239 atagatatatttctttttaactcgctttgattaattatattgaaaa 284  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||    
T  5880 atagatatatttctttctaaattgctttgattaattatattgaaaa 5925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 4833 - 4869
Alignment:
Q  252 tttttaactcgctttgattaattatattgaaaaatat 288  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  4833 tttttaactcgttttaattaattatattgaaaaatat 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University