View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_56 (Length: 320)
Name: NF19379_low_56
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 114 - 305
Target Start/End: Complemental strand, 3676047 - 3675856
Alignment:
| Q |
114 |
tgactacatggaattcaattttcttacaacccttactcaattctcaatgatgaaataatttgtggtgaaacactacttatctctcgatcatgtaaatcac |
213 |
Q |
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| T |
3676047 |
tgactacatggaattcaattttcttacaacccttgctcaattctcaatgatgaaataatttgtggtgaaacactacttatctctcgatcatgtaaatccc |
3675948 |
T |
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| Q |
214 |
tccaaagctcatattcccaagaagaagaaaaaatcaagaaaatgtccaattgatgatgagaaattaaaaaacttaccagagcaagtcttctg |
305 |
Q |
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| T |
3675947 |
tccaaagctcatattcccaagaagaagaaaaaatcaagacaatgtccaactgatgatgagaaattaaaaaacttaccagagcaagtcttctg |
3675856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 3666454 - 3666397
Alignment:
| Q |
241 |
aaaaaatcaagaaaatgtccaattgatgatgagaaattaaaaaacttaccagagcaag |
298 |
Q |
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| T |
3666454 |
aaaaaatcaagacaatgtctaattagtgatgagaaattaagaaatttaccagagcaag |
3666397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 3683357 - 3683296
Alignment:
| Q |
241 |
aaaaaatcaagaaaatgtccaattgatgatgagaaattaaaaaacttaccagagcaagtctt |
302 |
Q |
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| T |
3683357 |
aaaaaattaggacaatgtgcaattgatgatgggaaaataataaacgtaccagagcaagtctt |
3683296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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