View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_60 (Length: 310)
Name: NF19379_low_60
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 44019830 - 44019549
Alignment:
| Q |
17 |
attataaaagtccaaataatcaaaatgacatcaataacgtaattgcagagattaatctttcaatattattaaaattcatttaaagtgttgatttctttta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
44019830 |
attataaaagtccaaataatcaaaatgacatcaataacataattgcagagattaatctttcaatattattaagattcatttaaaatgttgatttc-ttta |
44019732 |
T |
|
| Q |
117 |
acatatattttttcacatacatccatgagtaatcaaactcctatcaattaatggttaacaaactcaaatacctatat-------ctagaatgataaaatt |
209 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
44019731 |
acatatattttttcacatacatctatgagtaatcaaactcctaccaattaatggttaacaaactcaaataccaatatcatgatactagaatgataaaatt |
44019632 |
T |
|
| Q |
210 |
tgattcgtatgactatatattcaatcctaacatcaagttaacaataacaacaactaaattatcaatagatatatagatgacac |
292 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44019631 |
tgattcgcatgactatatattcaatcctaacatcaagttaacaataacaacaactaaattatcaatagatatatagatgacac |
44019549 |
T |
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