View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_61 (Length: 308)
Name: NF19379_low_61
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 53455195 - 53454917
Alignment:
| Q |
16 |
cacaacacatggatgaagaaaaaagactattgcaccagtctatagatagaccgaaatgtaatgaaatacttatttaaagttgaaaattatatgtttgaag |
115 |
Q |
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| T |
53455195 |
cacaacacatggatgaagaaaaaagactattgcacccgtctatagatagaccgaaatgtaatgaaatgcttatttaaagttgaaaattatatgtttgcag |
53455096 |
T |
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| Q |
116 |
atacttgaataaagattaaatctttgcaatgtcataactttcttattttttaatgttctgaatccaggtgcggataataattaaagccattaaagagatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53455095 |
atacttgaataaagattaaatctttgcaatgtcataactttcttattttttaatgttctgaatccaggtgcggataataattaaagccattaaagagatt |
53454996 |
T |
|
| Q |
216 |
aggagtttataaataaccaaaaagcatttttgctaatcccagaaaaaagcgcctttttcccttccattttttccacagg |
294 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53454995 |
aggagtttataaataactaaaaagcatttttgctaatcccagaaaaaagcgcctttttcccttccattttttccacagg |
53454917 |
T |
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