View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_62 (Length: 304)
Name: NF19379_low_62
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 59 - 286
Target Start/End: Complemental strand, 42216362 - 42216135
Alignment:
| Q |
59 |
ggataggttaggtcctggactcaccattacgctagtgacgaggacatctgtcaaggctccaagattacttacaaatcatcctccagagaggttgttagat |
158 |
Q |
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| T |
42216362 |
ggataggttaggttctggactcaccatcacgctagtgacgaggacatctctcaaggctccaagattacttacaaatcatcctccagagaggttgttagat |
42216263 |
T |
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| Q |
159 |
atttttgtggagtttaattttcattcacaaattcaaggtggtataagcgaacttgtcaacattttagagatcacatatagcggatgcaagcaaacatcta |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42216262 |
atttttgtggagtttaattttcattcacaaattcaaggtggtataagcgaacttgtcaacattttagagatcacatatatcggatgcaagcaaacatcta |
42216163 |
T |
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| Q |
259 |
gttattttttctttagatctgactattt |
286 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42216162 |
gttattttttctttagatctgactattt |
42216135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 59 - 286
Target Start/End: Complemental strand, 42198625 - 42198399
Alignment:
| Q |
59 |
ggataggttaggtcctggactcaccattacgctagtgacgaggacatctgtcaaggctccaagattacttacaaatcatcctccagagaggttgttagat |
158 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198625 |
ggataggttaggtcctgggctcac-atcacgctagtgacgaggacatctctcaaggctccaagattacttacaaatcatcctccagagaggttgttagat |
42198527 |
T |
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| Q |
159 |
atttttgtggagtttaattttcattcacaaattcaaggtggtataagcgaacttgtcaacattttagagatcacatatagcggatgcaagcaaacatcta |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42198526 |
atttttgtggagtttaattttcattcacaaattcaaggtggtataagcgaacttgtcaacattttagagatcacatatatcggatgcaagcaaacatcta |
42198427 |
T |
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| Q |
259 |
gttattttttctttagatctgactattt |
286 |
Q |
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| T |
42198426 |
gttattttttctttagatctgactattt |
42198399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 59 - 286
Target Start/End: Complemental strand, 42207493 - 42207267
Alignment:
| Q |
59 |
ggataggttaggtcctggactcaccattacgctagtgacgaggacatctgtcaaggctccaagattacttacaaatcatcctccagagaggttgttagat |
158 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42207493 |
ggataggttaggtcctgggctcac-atcacgctagtgacgaggacatctctcaaggctccaagattacttacaaatcatcctccagagaggttgttagat |
42207395 |
T |
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| Q |
159 |
atttttgtggagtttaattttcattcacaaattcaaggtggtataagcgaacttgtcaacattttagagatcacatatagcggatgcaagcaaacatcta |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42207394 |
atttttgtggagtttaattttcattcacaaattcaaggtggtataagcgaacttgtcaacattttagagatcacatatatcggatgcaagcaaacatcta |
42207295 |
T |
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| Q |
259 |
gttattttttctttagatctgactattt |
286 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42207294 |
gttattttttctttagatctgactattt |
42207267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 42216404 - 42216374
Alignment:
| Q |
13 |
gaacatgattgaaacaacttttttcgtatga |
43 |
Q |
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| T |
42216404 |
gaacatgattgaaacaacttttttcgtatga |
42216374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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