View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19379_low_71 (Length: 280)

Name: NF19379_low_71
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19379_low_71
NF19379_low_71
[»] chr7 (16 HSPs)
chr7 (20-166)||(3683212-3683358)
chr7 (168-259)||(35599848-35599939)
chr7 (153-256)||(3683378-3683480)
chr7 (194-263)||(27338257-27338326)
chr7 (199-259)||(33922786-33922846)
chr7 (168-259)||(34681662-34681752)
chr7 (168-259)||(36973305-36973397)
chr7 (193-268)||(43996347-43996423)
chr7 (188-259)||(33887898-33887969)
chr7 (194-263)||(35875080-35875149)
chr7 (194-263)||(39321024-39321093)
chr7 (193-226)||(40089271-40089304)
chr7 (195-235)||(6392177-6392217)
chr7 (175-259)||(24299177-24299261)
chr7 (194-258)||(35567109-35567173)
chr7 (23-103)||(47801389-47801469)
[»] chr2 (13 HSPs)
chr2 (168-259)||(13538364-13538456)
chr2 (23-107)||(2089878-2089962)
chr2 (168-259)||(41543946-41544038)
chr2 (168-263)||(32859754-32859849)
chr2 (193-258)||(14663227-14663292)
chr2 (168-263)||(18684329-18684426)
chr2 (27-103)||(355611-355687)
chr2 (175-259)||(6334718-6334802)
chr2 (23-95)||(44602553-44602625)
chr2 (168-213)||(5962057-5962102)
chr2 (194-259)||(8964387-8964452)
chr2 (195-259)||(2826002-2826066)
chr2 (166-254)||(45076179-45076266)
[»] chr4 (16 HSPs)
chr4 (163-263)||(2063440-2063539)
chr4 (192-263)||(24546750-24546821)
chr4 (23-102)||(25057464-25057543)
chr4 (168-259)||(49532297-49532387)
chr4 (170-258)||(48097923-48098011)
chr4 (192-259)||(19597196-19597263)
chr4 (168-230)||(52650765-52650827)
chr4 (195-259)||(2818355-2818419)
chr4 (169-257)||(24369378-24369465)
chr4 (175-259)||(53261534-53261618)
chr4 (168-215)||(45900239-45900286)
chr4 (168-267)||(49400582-49400680)
chr4 (176-259)||(53737840-53737923)
chr4 (168-244)||(13800757-13800831)
chr4 (168-257)||(30978696-30978785)
chr4 (170-259)||(39274933-39275021)
[»] chr8 (19 HSPs)
chr8 (169-263)||(37564374-37564468)
chr8 (175-259)||(39691160-39691244)
chr8 (168-263)||(31264966-31265061)
chr8 (169-263)||(25279899-25279992)
chr8 (194-258)||(15352117-15352181)
chr8 (168-259)||(28207593-28207684)
chr8 (195-258)||(42022640-42022703)
chr8 (168-258)||(20279602-20279692)
chr8 (168-258)||(21066229-21066319)
chr8 (192-259)||(1502716-1502784)
chr8 (169-259)||(25382592-25382683)
chr8 (170-259)||(1876528-1876617)
chr8 (194-259)||(25163068-25163133)
chr8 (169-213)||(33636688-33636732)
chr8 (169-224)||(12639900-12639955)
chr8 (168-259)||(12782746-12782837)
chr8 (195-261)||(33013041-33013107)
chr8 (168-241)||(9024457-9024530)
chr8 (182-259)||(12684540-12684617)
[»] chr5 (11 HSPs)
chr5 (195-259)||(967098-967162)
chr5 (168-263)||(25437916-25438012)
chr5 (168-263)||(7719173-7719268)
chr5 (195-258)||(24041070-24041133)
chr5 (23-75)||(12237429-12237481)
chr5 (193-235)||(4695066-4695108)
chr5 (196-258)||(33590051-33590113)
chr5 (199-263)||(26663635-26663699)
chr5 (199-263)||(26935230-26935294)
chr5 (166-258)||(30501187-30501279)
chr5 (166-258)||(30541530-30541622)
[»] chr3 (11 HSPs)
chr3 (23-107)||(644451-644535)
chr3 (168-263)||(54290819-54290914)
chr3 (193-263)||(53040463-53040533)
chr3 (195-263)||(11692729-11692797)
chr3 (195-263)||(43803965-43804033)
chr3 (56-105)||(42830458-42830507)
chr3 (22-75)||(32517415-32517468)
chr3 (210-259)||(51039766-51039815)
chr3 (168-216)||(3027074-3027122)
chr3 (23-98)||(28946868-28946944)
chr3 (175-235)||(48551016-48551076)
[»] chr1 (14 HSPs)
chr1 (172-263)||(5250943-5251034)
chr1 (168-253)||(39912262-39912347)
chr1 (197-259)||(5423792-5423854)
chr1 (194-259)||(1048716-1048780)
chr1 (195-263)||(46592511-46592579)
chr1 (20-75)||(16586928-16586983)
chr1 (58-107)||(4534372-4534421)
chr1 (168-259)||(16113888-16113979)
chr1 (201-259)||(1600951-1601009)
chr1 (167-213)||(26687506-26687552)
chr1 (169-215)||(32572766-32572812)
chr1 (168-258)||(34861259-34861349)
chr1 (210-259)||(26857237-26857286)
chr1 (193-258)||(44442244-44442309)
[»] chr6 (8 HSPs)
chr6 (194-255)||(6586467-6586528)
chr6 (193-259)||(25028744-25028810)
chr6 (167-236)||(4810596-4810665)
chr6 (168-207)||(31854763-31854802)
chr6 (168-259)||(30509285-30509376)
chr6 (194-259)||(1840978-1841043)
chr6 (170-203)||(9762774-9762807)
chr6 (25-77)||(13215131-13215183)
[»] scaffold0011 (1 HSPs)
scaffold0011 (197-259)||(219188-219250)
[»] scaffold0031 (1 HSPs)
scaffold0031 (23-107)||(66792-66876)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 3683212 - 3683358
Alignment:
Q  20 atatcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattttaatctcaaaggcaattcccccacccaacagttaagaaataaat 119  Q
    |||||||||||||||||||| ||||||||| |||||||||||| ||||  |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  3683212 atatcctccaccgaacactccttactgacatccaactcaaaaaggcggaaattttttaatctcaaaggcaattcccccacccaacagttaagaaataaat 3683311  T
Q  120 tgaaacaatttctgaacataattannnnnnnagtagattttagatat 166  Q
    |||||||||||| |||||||||||       ||||||||||||||||    
T  3683312 tgaaacaatttccgaacataattatttttttagtagattttagatat 3683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 35599939 - 35599848
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| |||||||||||| |||| | ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| || |||||    
T  35599939 ggtcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatg 35599848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 3683378 - 3683480
Alignment:
Q  153 tagattttagatataggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatt 252  Q
    ||||||||| |||| ||| || ||||||||||||||||  |||||||||||||||| |||||||| ||| ||||| || |||| ||||||||||||||||    
T  3683378 tagattttaaatatgggttttgttaacgagtgcccccggcacactctttaagcataataaattaggaaaatattc-ttgaaaatttcaaatagttcaatt 3683476  T
Q  253 tcca 256  Q
    ||||    
T  3683477 tcca 3683480  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 27338257 - 27338326
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||    
T  27338257 cactctttaagcatgctaaattagaaaattattctttaaaaaaatcaaacagttcaatttccaatatatt 27338326  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 33922846 - 33922786
Alignment:
Q  199 tttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  33922846 tttaagcattctaaattagaaaattattctttaaaaaagtcaaatagttcaattttcaatg 33922786  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 34681662 - 34681752
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| |||||||||||||| |   || ||||||||||| ||||||||| |||||||| |||  |||| ||||||||||||||||||||||    
T  34681662 ggtcttcttaacgagtgccccgggg-cagtctttaagcattctaaattaggaaattattttttacaaaagtcaaatagttcaatttccaatg 34681752  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 36973305 - 36973397
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattcttt-caaaaattcaaatagttcaatttccaatg 259  Q
    |||||| |||||||||||| |||   |||||||||||||| | ||||||| || |||||||||  ||||| ||||||| ||||||||||||||    
T  36973305 ggtcttgttaacgagtgcctccggtgcactctttaagcattccaaattaggaagttattctttaaaaaaaatcaaataattcaatttccaatg 36973397  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 43996347 - 43996423
Alignment:
Q  193 acactctttaagcatactaaattagaaaattattctttcaaaaattcaaat-agttcaatttccaatgtatttaatg 268  Q
    |||||||||||||||||||| ||||||||||||||||| || || | |||| |||||||||| ||||| ||| ||||    
T  43996347 acactctttaagcatactaagttagaaaattattctttaaacaagttaaataagttcaattttcaatgcattaaatg 43996423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 33887969 - 33887898
Alignment:
Q  188 ccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||| ||||||||||||||| | ||| || | ||||||||||| ||||| ||||||| |||||||| |||||    
T  33887969 ccgagacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatg 33887898  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 35875080 - 35875149
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    ||||||||||||||  |||||||||||||||||  || ||||| | ||||||||||| ||  ||||||||    
T  35875080 cactctttaagcattataaattagaaaattattaattaaaaaagttaaatagttcaacttttaatgtatt 35875149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 39321093 - 39321024
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||||||||||||| |||||  | ||||||||||| ||||| |||| || | |||||| |||||||||    
T  39321093 cactctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtatt 39321024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 40089271 - 40089304
Alignment:
Q  193 acactctttaagcatactaaattagaaaattatt 226  Q
    ||||||||||||||||| ||||||||||||||||    
T  40089271 acactctttaagcataccaaattagaaaattatt 40089304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 6392177 - 6392217
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaa 235  Q
    ||||||||||||| ||||||||  |||||||||||||||||    
T  6392177 actctttaagcattctaaattaagaaattattctttcaaaa 6392217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 24299261 - 24299177
Alignment:
Q  175 ttaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||| ||||||||||| ||| |||||||||  |||||||  ||||||||| || ||||  ||||||  || |||||||||||    
T  24299261 ttaacgaatgcccccgaaatactttttaagcatgttaaattaagaaattattccttaaaaatgtcaaattttttaatttccaatg 24299177  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 35567109 - 35567173
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||||||| |||||   |||||||||||||||| ||| ||||| ||||||| || ||||||||||    
T  35567109 cactcttttagcatttcaaattagaaaattattttttaaaaaagtcaaatattttaatttccaat 35567173  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 47801389 - 47801469
Alignment:
Q  23 tcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattttaatctcaaaggcaattcccccacccaa 103  Q
    ||||||||||| ||||| |||   || ||||| ||||| | |||||| ||||||||| ||||||| | |||||||||||||    
T  47801389 tcctccaccgagcactccttaaaaactgccaaatcaaataagcgggggaattttaatttcaaaggtacttcccccacccaa 47801469  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 13538364 - 13538456
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaa-cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  13538364 ggtcttgttaacgagtgcccccgagggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatg 13538456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 2089878 - 2089962
Alignment:
Q  23 tcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattttaatctcaaaggcaattcccccacccaacagt 107  Q
    |||| ||||||||| |  |||||||| ||||  ||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  2089878 tccttcaccgaacatttcttactgaccgccaggtcaaaaaggcggggaaattttaatctcaaaggcatttcccccacccaacagt 2089962  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 41543946 - 41544038
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattcttt-caaaaattcaaatagttcaatttccaatg 259  Q
    |||||| ||||||||| | |||||  || |||||||||||| |||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  41543946 ggtcttgttaacgagtactcccgaggcattctttaagcatattaaattaggaaattattctttaaaaaaattcaaatagttcaatttccaatg 41544038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 32859754 - 32859849
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||| |||||||||||||||    |||||||||| ||| ||||||||| || ||||||||| ||||| ||||| ||||||||||||||||||||    
T  32859754 ggtcttgttaacgagtgcccccagggcactctttaaacatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtatt 32859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 14663292 - 14663227
Alignment:
Q  193 acactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    ||||| |||||||||  ||||||| ||||||||||||| || || |||||||||||||||||||||    
T  14663292 acactttttaagcattttaaattaaaaaattattctttaaataagtcaaatagttcaatttccaat 14663227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 18684329 - 18684426
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactcttt--aagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||| ||||||||||| | ||  |||||||||  |||||| ||||||||| || ||||||||| ||||| ||| | | ||||||||||||||||||    
T  18684329 ggtcttgttaacgagtgctctcgggacactcttttaaagcatgctaaattaggaagttattctttaaaaaagtcatacaattcaatttccaatgtatt 18684426  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 355687 - 355611
Alignment:
Q  27 ccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattttaatctcaaaggcaattcccccacccaa 103  Q
    |||||| |||||| ||| | |||||||| |||||||  || |||||||| |||| ||||||||||||||| ||||||    
T  355687 ccaccgtacactctttatttacagccaagtcaaaaagtcgaggaaatttaaatcgcaaaggcaattccccaacccaa 355611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 6334802 - 6334718
Alignment:
Q  175 ttaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||||||| || || |||||||||||| ||| |||||||| ||||||||| ||| ||||  |||||   ||||||||||||||    
T  6334802 ttaacgagtgtcctcggaacactctttaaacatgctaaattaaaaaattattttttaaaaatgtcaaagttttcaatttccaatg 6334718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 44602625 - 44602553
Alignment:
Q  23 tcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattttaatctcaaaggcaattccc 95  Q
    |||||||| |||||||| |||| |||||| |  | ||||| || ||||||||||||||||||||||| |||||    
T  44602625 tcctccactgaacactccttacagacagcaaggtaaaaaaggcagggaaattttaatctcaaaggcatttccc 44602553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 5962102 - 5962057
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaa 213  Q
    |||||| |||||||||||| |||| ||||||||||||||| |||||    
T  5962102 ggtcttgttaacgagtgcctccgagacactctttaagcattctaaa 5962057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 8964387 - 8964452
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||| ||||||||| ||||||||   ||||||||||| ||||| | ||||| ||||||||||||||    
T  8964387 cactgtttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatg 8964452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 2826066 - 2826002
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||||||||||| ||  |||||||| ||| ||||| | ||||| ||| ||||||||||    
T  2826066 actctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatg 2826002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 45076266 - 45076179
Alignment:
Q  166 taggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttc 254  Q
    ||||||||||||||||||| ||| ||  |||||||||| ||||||||| ||   ||||||||||| ||||| | ||||| || ||||||    
T  45076266 taggtcttattaacgagtgtccc-gaggcactctttaaacatactaaaataagcaattattctttaaaaaagttaaatattttaatttc 45076179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 2063440 - 2063539
Alignment:
Q  163 atataggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtat 262  Q
    |||| |||||| ||||||||||| |||| | |||||||||||||| ||||||||| || ||||||||| ||||| ||||| |||||||||||||||||||    
T  2063440 atatgggtcttgttaacgagtgctcccgga-cactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtat 2063538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 24546821 - 24546750
Alignment:
Q  192 aacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    ||||||||||||||||  |||||||| |||||||||||| ||||||||||  ||||||||||||||||||||    
T  24546821 aacactctttaagcatgttaaattaggaaattattctttaaaaaattcaagcagttcaatttccaatgtatt 24546750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 25057464 - 25057543
Alignment:
Q  23 tcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattttaatctcaaaggcaattcccccaccca 102  Q
    ||||||||||||||||| || | ||||||||  ||||||| ||| | ||||||||||| |||||||| ||||||||||||    
T  25057464 tcctccaccgaacactccttgcagacagccaggtcaaaaaagcgagaaaattttaatcgcaaaggcatttcccccaccca 25057543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 49532387 - 49532297
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| ||||||||||||||||  ||||||| ||||||| | ||||||  |||||||||||| | ||| ||||||| ||||||||||||||    
T  49532387 ggtcttgttaacgagtgcccccgggacactctgtaagcattccaaattaagaaattattcttt-ataaaatcaaataattcaatttccaatg 49532297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 48097923 - 48098011
Alignment:
Q  170 tcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||| |||||||||| | ||| | |||| |||||| || ||||||||  |||||||||||| ||||| | |||||||||||||||||||    
T  48097923 tcttgttaacgagtgtctccggagcactttttaagtattctaaattaagaaattattctttaaaaaagttaaatagttcaatttccaat 48098011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 19597263 - 19597196
Alignment:
Q  192 aacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| ||||||||| ||| ||||| |||||||||||| ||||  ||||||||||||||||| ||||    
T  19597263 aacactttttaagcattctacattaggaaattattctttaaaaatgtcaaatagttcaatttctaatg 19597196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 52650827 - 52650765
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattcttt 230  Q
    |||||| |||||||||||| ||| |||||||||||| ||| ||||||||  ||||||||||||    
T  52650827 ggtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattcttt 52650765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 2818355 - 2818419
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||||||||||  |||||||  |||||||||||| ||||  ||||| ||||||||||||||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaatttccaatg 2818419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 24369378 - 24369465
Alignment:
Q  169 gtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaa 257  Q
    ||||| |||| ||||||||||||  |||||||||| ||||||||| || | |||||||||||  |||| ||||| | ||||||||||||    
T  24369378 gtcttgttaaagagtgcccccgag-cactctttaaacatactaaaataaacaattattctttataaaagtcaaacatttcaatttccaa 24369465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 53261534 - 53261618
Alignment:
Q  175 ttaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||||||||||||   ||||||||||||||| ||||||||   ||||||||||| |||| || |||   ||||||||||||||    
T  53261534 ttaacgagtgcccccaggacactctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatg 53261618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 45900286 - 45900239
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaatt 215  Q
    |||||| |||||||||||||||||  |||||||||||||| |||||||    
T  45900286 ggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatt 45900239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 49400582 - 49400680
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatttaat 267  Q
    |||||| ||||||||||| || ||  |||| ||||||||| |||||||    ||||||||||| ||||| |||| || | ||||||||||||||||||||    
T  49400582 ggtcttgttaacgagtgctccagag-cactatttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtatttaat 49400680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 53737923 - 53737840
Alignment:
Q  176 taacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||||||    |||||||||||| | | ||| ||  |||||||||||| ||||||||||||| ||| ||||||||||    
T  53737923 taacgagtgcccccagggcactctttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatg 53737840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 13800831 - 13800757
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaa-ttagaaaattattctttcaaaaattcaaata 244  Q
    |||||| |||||||||||||||  ||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||    
T  13800831 ggtcttgttaacgagtgccccc--aacactctttaaggatcctaaatttagaaaa-tattctttaaaaaagtcaaata 13800757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 30978785 - 30978696
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaa 257  Q
    |||||| |||| ||||||||| |   |||||||||||||| | ||||||  |||| |||  || ||||| ||||||||||||||||||||    
T  30978785 ggtcttgttaaggagtgcccctggggcactctttaagcattccaaattaagaaatgatttattaaaaaagtcaaatagttcaatttccaa 30978696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 39274933 - 39275021
Alignment:
Q  170 tcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||||||||||| |   |||| ||||||||| | ||| || | ||||||| ||| ||||| ||||||| ||||||||||||||    
T  39274933 tcttattaacgagtgccccgggg-cactatttaagcattcaaaagtaaacaattatttttttaaaaaatcaaatatttcaatttccaatg 39275021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 37564468 - 37564374
Alignment:
Q  169 gtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    ||||| |||||||||||| | |  ||||||||||| ||| ||||||||  |||||||||||| ||||| ||||||||||||||||||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaatagttcaatttccaatgtatt 37564374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 39691244 - 39691160
Alignment:
Q  175 ttaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||||| ||| ||||||||||||||| | | |||| ||||||||||||| ||||| |||||||||||||||| |||||    
T  39691244 ttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatg 39691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 31264966 - 31265061
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||| |||||||||||||| |   |||||||||||||| ||||||||| || ||||||||| ||||| ||||| | ||||||||||||||||||    
T  31264966 ggtcttgttaacgagtgcccctgtggcactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacaattcaatttccaatgtatt 31265061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 25279899 - 25279992
Alignment:
Q  169 gtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    ||||| ||||||||||||||    ||||||||||||||| ||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||||    
T  25279899 gtcttgttaacgagtgcccctacgacactctttaagcatgctaaattaggaagttattcttt-aaaaagtcaaataattcaatttccaatgtatt 25279992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 15352181 - 15352117
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||||||||| ||| |||||||| ||||||||||| | ||||| |||||||||||||||||||||    
T  15352181 cactctttaaacattctaaattaaaaaattattctgtaaaaaagtcaaatagttcaatttccaat 15352117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 28207593 - 28207684
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| ||||||||||||||||| ||||||||||||||| | |||||  | ||| ||||||| ||||| |||| || | ||||||||||||    
T  28207593 ggtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatg 28207684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 42022703 - 42022640
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||||||||||||  ||||||| ||||||||| ||| ||||| |||||||||||||||||||||    
T  42022703 actctttaagcattttaaattaaaaaattattttttaaaaaagtcaaatagttcaatttccaat 42022640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 20279692 - 20279602
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||||| ||||| ||||||||||   |||||||||||||| ||||| ||   ||||||||||||||||| ||||||| |||||||| ||||    
T  20279692 ggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattttcaat 20279602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 21066319 - 21066229
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||||| ||||| ||||||||||   |||||||||||||| ||||| ||   ||||||||||||||||| ||||||| |||||||| ||||    
T  21066319 ggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattttcaat 21066229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 1502784 - 1502716
Alignment:
Q  192 aacactctttaagcatactaaattagaaaattattcttt-caaaaattcaaatagttcaatttccaatg 259  Q
    |||||||||||| ||| ||||||||| ||||||||||||  ||||||||||| |||||||||| |||||    
T  1502784 aacactctttaaacattctaaattaggaaattattctttaaaaaaattcaaacagttcaattttcaatg 1502716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 25382592 - 25382683
Alignment:
Q  169 gtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattcttt-caaaaattcaaatagttcaatttccaatg 259  Q
    ||||| |||||||||||||||||| || | ||||||||| | ||||||  ||||||||||||  ||||| | ||||||| ||||||||||||    
T  25382592 gtcttgttaacgagtgcccccgaagcattttttaagcattccaaattaagaaattattctttaaaaaaagtaaaatagtccaatttccaatg 25382683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 1876617 - 1876528
Alignment:
Q  170 tcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||| ||||||||||||||||   |||||||||||||| ||||||||   ||||||||||| ||||  |||||   ||||||||||||||    
T  1876617 tcttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatg 1876528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 25163133 - 25163068
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||| || | |||||| ||||||||||||  ||||| ||||||| ||||||||||||||    
T  25163133 cactctttaagtattcaaaattaaaaaattattcttagaaaaagtcaaatatttcaatttccaatg 25163068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 33636688 - 33636732
Alignment:
Q  169 gtcttattaacgagtgcccccgaaacactctttaagcatactaaa 213  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||    
T  33636688 gtcttattaacgagtgcgcccgagacactctttaagcattctaaa 33636732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 12639900 - 12639955
Alignment:
Q  169 gtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaatta 224  Q
    ||||| |||||||||||| ||| |||||| ||||||||| ||||||||| ||||||    
T  12639900 gtcttgttaacgagtgcctccggaacactttttaagcattctaaattaggaaatta 12639955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 12782746 - 12782837
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| ||||||| || | ||| |||||||||||||||||||||| ||   ||||||||||| ||||| |  |||| ||| ||||||||||    
T  12782746 ggtcttgttaacgaatgtctccggaacactctttaagcatactaaaatatgcaattattctttaaaaaagttgaatatttcgatttccaatg 12782837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 33013041 - 33013107
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgta 261  Q
    ||||||||||||||| |||||  | ||||||||||| ||||| |||| || | ||||||||||||||    
T  33013041 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttccaatgta 33013107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 9024457 - 9024530
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaa 241  Q
    |||||| |||| ||||||| ||||||||||||||||| | || |||||    ||||||||||||||||| ||||    
T  9024457 ggtcttgttaatgagtgcctccgaaacactctttaagaaaaccaaatttagtaattattctttcaaaaaatcaa 9024530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 12684617 - 12684540
Alignment:
Q  182 gtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||| ||||||||||||||||||||| | |||||  | ||||||||||||||| | |||| || | ||||||| ||||    
T  12684617 gtgctcccgaaacactctttaagcattccaaatttaataattattctttcaaagaatcaactattacaatttctaatg 12684540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 967098 - 967162
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  967098 actctttaagcataccaaattaggatattattctttaaaaaattcaaatagttcaatttccaatg 967162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 25438012 - 25437916
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattcttt-caaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||||  || |||||||||  ||||| | ||| ||||||||||||||||||||    
T  25438012 ggtcttgttaacgagtgcccccgggacactctttaagcatgctaaattaagaagttattctttaaaaaaagtgaaacagttcaatttccaatgtatt 25437916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 7719173 - 7719268
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||| ||||||||||||||||  ||||||||||||||||| | |||  ||||||||||||| ||||| |||| || | ||||||||||| ||||    
T  7719173 ggtctttttaacgagtgcccccgggacactctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatatatt 7719268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 24041133 - 24041070
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    ||||||||||||||  ||||||  |||||||||||| |||||||||||||||| ||||||||||    
T  24041133 actctttaagcatatcaaattatgaaattattctttaaaaaattcaaatagtttaatttccaat 24041070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 12237481 - 12237429
Alignment:
Q  23 tcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattt 75  Q
    ||||||||||||||||| || ||||||||||| ||||||| ||| ||||||||    
T  12237481 tcctccaccgaacactccttcctgacagccaaatcaaaaaggcgaggaaattt 12237429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 4695066 - 4695108
Alignment:
Q  193 acactctttaagcatactaaattagaaaattattctttcaaaa 235  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||    
T  4695066 acactctttaagcatgctaaattaaaaaattattctttaaaaa 4695108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 33590051 - 33590113
Alignment:
Q  196 ctctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    ||||||||  || ||||||||  |||||||||||| ||||| | |||||||||||||||||||    
T  33590051 ctctttaaatattctaaattaataaattattcttttaaaaaattaaatagttcaatttccaat 33590113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 26663635 - 26663699
Alignment:
Q  199 tttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    ||||||||| ||||| ||  |||||||| ||| ||||| ||||||| ||| ||||||||||||||    
T  26663635 tttaagcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtatt 26663699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 26935230 - 26935294
Alignment:
Q  199 tttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    ||||||||| ||||| ||  |||||||| ||| ||||| ||||||| ||| ||||||||||||||    
T  26935230 tttaagcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtatt 26935294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 30501279 - 30501187
Alignment:
Q  166 taggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||||||| |||||||||||||||    |||||||||||||| | |||||    ||||||||||| ||||| |||| || | |||||||||||    
T  30501279 taggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaat 30501187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 30541622 - 30541530
Alignment:
Q  166 taggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||||||| |||||||||||||||    |||||||||||||| | |||||    ||||||||||| ||||| |||| || | |||||||||||    
T  30541622 taggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaat 30541530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 644451 - 644535
Alignment:
Q  23 tcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattttaatctcaaaggcaattcccccacccaacagt 107  Q
    ||||||||||||||||| ||| |||| ||||| ||||||| || ||||||||| ||||||||||||| || ||||||||||||||    
T  644451 tcctccaccgaacactccttattgaccgccaaatcaaaaaggccgggaaatttaaatctcaaaggcattttccccacccaacagt 644535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 54290914 - 54290819
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||| |||||||||  |||||   ||||||||||||||  |||||||| || ||||||||| ||||| ||||| ||||||||||||||||||||    
T  54290914 ggtcttgttaacgagtatccccggggcactctttaagcatgataaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtatt 54290819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 53040463 - 53040533
Alignment:
Q  193 acactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||||||||| || ||||||||  |||||||| ||| ||||||||||||| ||||||||||||||||||    
T  53040463 acactctttaaggattctaaattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtatt 53040533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 11692729 - 11692797
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||||||||||| ||||||| ||||||||||||| ||||| | |||||||| ||||| |||||||||    
T  11692729 actctttaagcatattaaattaaaaaattattctttaaaaaagtgaaatagtttaatttgcaatgtatt 11692797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 43803965 - 43804033
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    |||||||||||||  |||||| |||| ||||||||| ||||| ||||| | ||||||||||||||||||    
T  43803965 actctttaagcatgataaattggaaagttattctttaaaaaagtcaaacaattcaatttccaatgtatt 43804033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 42830507 - 42830458
Alignment:
Q  56 tcaaaaatgcggggaaattttaatctcaaaggcaattcccccacccaaca 105  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  42830507 tcaaaaaggcggggatattttaatctcaaaggcatgtcccccacccaaca 42830458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 32517415 - 32517468
Alignment:
Q  22 atcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattt 75  Q
    ||||||||||  |||||| ||||||||||| || ||||||| ||||||||||||    
T  32517415 atcctccaccatacactccttactgacagcaaaatcaaaaaggcggggaaattt 32517468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 51039766 - 51039815
Alignment:
Q  210 taaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||| ||||||||||| | ||||| |||||||||||||||| |||||    
T  51039766 taaattaaaaaattattctataaaaaagtcaaatagttcaattttcaatg 51039815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 3027122 - 3027074
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaatta 216  Q
    |||||| |||||||||||| ||| | |||||||||||||| ||||||||    
T  3027122 ggtcttgttaacgagtgcctccggagcactctttaagcattctaaatta 3027074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 28946868 - 28946944
Alignment:
Q  23 tcctccaccgaacactcgttactgacagccaactcaa-aaatgcggggaaattttaatctcaaaggcaattccccca 98  Q
    ||||||||| |||| || |||| |||||| |  |||| ||| ||||| |||||||||||||||||||| ||||||||    
T  28946868 tcctccaccaaacaatccttacagacagcaaggtcaacaaaggcgggaaaattttaatctcaaaggcatttccccca 28946944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 48551016 - 48551076
Alignment:
Q  175 ttaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaa 235  Q
    |||||||||| ||||  | |||||||||||||| ||||||||  |||||||||||| ||||    
T  48551016 ttaacgagtgtccccagagcactctttaagcatgctaaattaagaaattattctttaaaaa 48551076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 5251034 - 5250943
Alignment:
Q  172 ttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    ||||||||||||||| ||| | |||||||||| ||||||||||||| || ||||||||| ||||| ||||| |||| ||||| |||||||||    
T  5251034 ttattaacgagtgcctccggagcactctttaaacatactaaattaggaagttattctttaaaaaagtcaaacagtttaattttcaatgtatt 5250943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 39912347 - 39912262
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaattt 253  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||||| || ||||| ||| ||||| ||||| | ||||||||    
T  39912347 ggtcttgttaacgagtgcccccgggacactctttaagcatgctaaattaggaagttattatttaaaaaagtcaaacaattcaattt 39912262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 5423854 - 5423792
Alignment:
Q  197 tctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||||||||  ||||||||||||||||||||| ||||| | |||||||||||||| |||||    
T  5423854 tctttaagcattttaaattagaaaattattctttaaaaaagttaaatagttcaattttcaatg 5423792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 1048780 - 1048716
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| | |||||||||||||| |||||    
T  1048780 cactctttaagcataccaaattaaaaaattattcttt-aaaaagttaaatagttcaattttcaatg 1048716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 46592579 - 46592511
Alignment:
Q  195 actctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatgtatt 263  Q
    ||||||||||||| ||||||||| || ||||||||| ||||| ||||| |||| |||||||||| ||||    
T  46592579 actctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacagtttaatttccaatatatt 46592511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 16586983 - 16586928
Alignment:
Q  20 atatcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattt 75  Q
    ||||||||||| |||||||| |||||||||||||  ||||||| ||||||||||||    
T  16586983 atatcctccactgaacactccttactgacagccagatcaaaaaggcggggaaattt 16586928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 4534421 - 4534372
Alignment:
Q  58 aaaaatgcggggaaattttaatctcaaaggcaattcccccacccaacagt 107  Q
    ||||| |||||||||||| ||||||||||| | |||||||||||||||||    
T  4534421 aaaaaggcggggaaatttaaatctcaaaggtatttcccccacccaacagt 4534372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 16113888 - 16113979
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| |||||||||||| |||   |||||||||||||||||| ||||   ||||||| ||||||||  |||||   ||||||||||||||    
T  16113888 ggtcttgttaacgagtgcctccggggcactctttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaatttccaatg 16113979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 1600951 - 1601009
Alignment:
Q  201 taagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||| |||||||| ||||||||||||| ||||  | ||||||||||||||| ||||    
T  1600951 taagcattctaaattacaaaattattctttaaaaatgttaaatagttcaatttcaaatg 1601009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 26687506 - 26687552
Alignment:
Q  167 aggtcttattaacgagtgcccccgaaacactctttaagcatactaaa 213  Q
    |||| |||||||||||||||| || |||||||||||||||| |||||    
T  26687506 aggtgttattaacgagtgccctcggaacactctttaagcattctaaa 26687552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 32572766 - 32572812
Alignment:
Q  169 gtcttattaacgagtgcccccgaaacactctttaagcatactaaatt 215  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||||    
T  32572766 gtcttattaacgagtgtccctgcgacactctttaagcatactaaatt 32572812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 34861349 - 34861259
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    |||||| |||||||||||||| |   |||||||||||||| ||||||||   ||||||| ||| ||||  ||||| | |||||||||||||    
T  34861349 ggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatttccaat 34861259  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 26857286 - 26857237
Alignment:
Q  210 taaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||| |||||    
T  26857286 taaattagaaaattattctttaaaaaagttaaatagtttaattttcaatg 26857237  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 44442244 - 44442309
Alignment:
Q  193 acactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaat 258  Q
    ||||| |||||| ||  |||||||| |||||||||||| ||||| ||||||| |||||||| ||||    
T  44442244 acactttttaagtattttaaattaggaaattattctttaaaaaagtcaaatatttcaattttcaat 44442309  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 6586528 - 6586467
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttcc 255  Q
    |||||||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||    
T  6586528 cactctttaagcatactaaattaggaaattaatctttgaaaaagtcagatagttcaatttcc 6586467  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 25028810 - 25028744
Alignment:
Q  193 acactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||| ||||| |||||||||| |||||    
T  25028810 acactctttaaacattcaaaattagaaaattattctttaaaaaagtcaaacagttcaattttcaatg 25028744  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 4810665 - 4810596
Alignment:
Q  167 aggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaa 236  Q
    ||||||| |||| ||||||||||||  |||| ||||||||| |||||| ||||||||||||||| |||||    
T  4810665 aggtcttgttaaagagtgcccccgaggcactatttaagcattctaaatcagaaaattattctttaaaaaa 4810596  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 31854763 - 31854802
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcat 207  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  31854763 ggtcttattaacgagtgcccccgagacactctttaagcat 31854802  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 30509285 - 30509376
Alignment:
Q  168 ggtcttattaacgagtgcccccgaaacactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||| |||||||||| | ||| |||||||||||||||||| ||| ||   ||||||||||| ||||| ||||| | ||| |||| |||||    
T  30509285 ggtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatg 30509376  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 1840978 - 1841043
Alignment:
Q  194 cactctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    ||||||||||||||| ||||||  | ||||||||||| ||||| |||| || | ||||||||||||    
T  1840978 cactctttaagcatattaaatttaataattattcttttaaaaaatcaactattacaatttccaatg 1841043  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 9762774 - 9762807
Alignment:
Q  170 tcttattaacgagtgcccccgaaacactctttaa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  9762774 tcttgttaacgagtgcccccgaaacactctttaa 9762807  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 13215183 - 13215131
Alignment:
Q  25 ctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaatttta 77  Q
    ||||||||||||||| ||| |||||| |||| |||| | ||||||||||||||    
T  13215183 ctccaccgaacactccttattgacagacaacgcaaataggcggggaaatttta 13215131  T

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Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 219188 - 219250
Alignment:
Q  197 tctttaagcatactaaattagaaaattattctttcaaaaattcaaatagttcaatttccaatg 259  Q
    |||||||||||  |||||||| ||||||||||||  |||| ||||||||||||||||||||||    
T  219188 tctttaagcattttaaattaggaaattattctttacaaaagtcaaatagttcaatttccaatg 219250  T

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Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 66792 - 66876
Alignment:
Q  23 tcctccaccgaacactcgttactgacagccaactcaaaaatgcggggaaattttaatctcaaaggcaattcccccacccaacagt 107  Q
    ||||||| ||| ||||| ||||| || ||||| |||||||   | |||||||||||| ||||||||| |||||||||||||||||    
T  66792 tcctccatcgagcactccttactaaccgccaaatcaaaaagatgaggaaattttaatttcaaaggcatttcccccacccaacagt 66876  T

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