View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_72 (Length: 274)
Name: NF19379_low_72
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 49353237 - 49352981
Alignment:
| Q |
1 |
tttatgcaaccattgagtttcaaagtgtatagattctggagtttgcacaatgagtcaggaaggctcttcaattctttgctttttccaagatcgagatatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49353237 |
tttatgcaaccattgagtttcaaagtgtatagattctggagtttgcacaatgagtcaggaaggctcttcaattctttgctttttccaagattgagatatc |
49353138 |
T |
|
| Q |
101 |
ttaaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353137 |
ttaaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagtttt |
49353038 |
T |
|
| Q |
201 |
caagaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtagg |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353037 |
caagaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtagg |
49352981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 49341858 - 49341603
Alignment:
| Q |
1 |
tttatgcaaccattgagtttcaaagtgtatagattctggagtttgcacaatgagtcaggaaggctcttcaattctttgctttttccaagatcgagatatc |
100 |
Q |
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||||||||||||| ||| | |||||| | ||||||||||||||||||| ||| | ||| ||||||||||||||||| | || |||||| |||||||| |
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| T |
49341858 |
tttatgcaaccatcgagat-caaagtatgcagattctggagtttgcacactgaattagggaggctcttcaattctttattattctcaagattgagatatc |
49341760 |
T |
|
| Q |
101 |
ttaaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagtttt |
200 |
Q |
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| T |
49341759 |
ttaaatgttttaattttcaaatagagcggggaaaactctcatatttagaatgagctaaccgtaaaacacgcaagaatttgaaccttgacgccaatgtttt |
49341660 |
T |
|
| Q |
201 |
caagaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtagg |
257 |
Q |
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|||||||||||||||||| |||||||| ||||||| || ||||||||| || ||||| |
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| T |
49341659 |
caagaaagcttcattgttagctcccttgggaaatagcatggttctcagacctgtagg |
49341603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 19031019 - 19030940
Alignment:
| Q |
178 |
ttgcaccttgacaccaaagttttcaagaaagcttcattgttggctcccttaggaaatatcaaggttctcaggccagtagg |
257 |
Q |
| |
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||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||| | ||||| || |||||||| |
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| T |
19031019 |
ttgcaccttgataccaaaatgttcaagaaagcttcatcgttggctcccttaggaaatatgatagttcttagaccagtagg |
19030940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 32783062 - 32783288
Alignment:
| Q |
31 |
agattctggagtttgcacaatgagtcaggaaggctcttcaattctttgctttttccaagatcgagatatcttaaatgttttaatttgccaatagagcggg |
130 |
Q |
| |
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||||||||||||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
32783062 |
agattctggagtttgcacagtgaattagggaggctcttcaattctttactattcttaagattgagatatctcaaatgttttaatttgccaatagagcggg |
32783161 |
T |
|
| Q |
131 |
gcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttcaagaaagcttcattgttggctcccttagg |
230 |
Q |
| |
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|||||||||| ||| ||||||||| ||||||||||| || |||||||||||||||||| |||||||||| || ||||||| || ||||||| ||| ||| |
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| T |
32783162 |
gcaaactctcatatttagaatcagctaactgtaaaagccgtaagaatttgcaccttgacgccaaagtttttaaaaaagctttatcgttggcttcctcagg |
32783261 |
T |
|
| Q |
231 |
aaatatcaaggttctcaggccagtagg |
257 |
Q |
| |
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||||| || |||||||| |||||||| |
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| T |
32783262 |
aaatagcatagttctcagaccagtagg |
32783288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 29601700 - 29601889
Alignment:
| Q |
33 |
attctggagtttgcacaatgagtcaggaaggctcttcaattctttgctttttccaagatcgagatatcttaaatgttttaatttgccaatagagcggggc |
132 |
Q |
| |
|
|||||| |||||||||| ||| ||||| ||||||||||||||||| || ||||| ||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
29601700 |
attctgaagtttgcacactgaatcagggaggctcttcaattctttatttcccttaagattgagatatctcaaatgttttaatttaccaattgagcggggc |
29601799 |
T |
|
| Q |
133 |
aaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttcaagaaagcttcattgttggct |
222 |
Q |
| |
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|||||||| |||||||||| || |||| | ||||| ||||||||||| |||||||| ||||| | ||||| |||||| ||||||||||| |
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| T |
29601800 |
aaactctcatatgtagaatgagttaaccgcaaaactcgcaagaatttacaccttgatgccaaattgttcaaaaaagctacattgttggct |
29601889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 29751594 - 29751406
Alignment:
| Q |
33 |
attctggagtttgcacaatgagtcaggaaggctcttcaattctttgctttttccaagatcgagatatcttaaatgttttaatttgccaatagagcggggc |
132 |
Q |
| |
|
|||||| |||||||||| ||| || || ||||||||||||||||| || ||||| ||||||||| |||||||||||||| ||||| |||||||| |
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| T |
29751594 |
attctgaagtttgcacactgaatctgggaggctcttcaattctttatttcccttaagat-gagatatctcaaatgttttaatttaccaattgagcgggga |
29751496 |
T |
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| Q |
133 |
aaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttcaagaaagcttcattgttggct |
222 |
Q |
| |
|
|||||||| |||||||||| || |||| | ||||| ||||||||||| |||||||| ||||| | ||||| |||||| ||||||||||| |
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| T |
29751495 |
aaactctcatatgtagaatgagttaaccgcaaaactcgcaagaatttacaccttgatgccaaattgttcaaaaaagctacattgttggct |
29751406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 29744560 - 29744373
Alignment:
| Q |
33 |
attctggagtttgcacaatgagtcaggaaggctcttcaattctttgctttttccaagatcgagatatcttaaatgttttaatttgccaatagagcggggc |
132 |
Q |
| |
|
|||||| |||||||||| ||| ||||| ||| ||||||||||||| | | ||||| |||||||| ||||| |||||||| |||| |||||||| |
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| T |
29744560 |
attctgaagtttgcacactgaatcagggaggatcttcaattctttattgtcctgaagattgagatatcgcaaatgctttaatttatcaattgagcggggt |
29744461 |
T |
|
| Q |
133 |
aaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcaccttgacaccaaagttttcaagaaagcttcattgttgg |
220 |
Q |
| |
|
|||||||| ||| |||||| || |||||| ||||| ||||||||||| ||||||| ||||| | |||||||||||| |||||||| |
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|
| T |
29744460 |
aaactctcatatttagaattagttaactgcaaaactcgcaagaatttaaaccttgatgccaaattgttcaagaaagctatattgttgg |
29744373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 35158659 - 35158521
Alignment:
| Q |
86 |
caagatcgagatatcttaaatgttttaatttgccaatagagcggggcaaactctcgtatgtagaatcaggtaactgtaaaacacgcaagaatttgcacct |
185 |
Q |
| |
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|||||| ||||||||| || ||||||||||| ||||| |||| ||||| ||||| ||| ||||| | || || ||||| |||||| || ||||||| |
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|
| T |
35158659 |
caagattgagatatctcaagtgttttaatttaccaatggagctaggcaagctctcatatccagaattatttatttgcaaaacccgcaagcatgtgcacct |
35158560 |
T |
|
| Q |
186 |
tgacaccaaagttttcaagaaagcttcattgttggctcc |
224 |
Q |
| |
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||| |||||||| |||||||||||||| |||||| |||| |
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| T |
35158559 |
tgataccaaagtattcaagaaagcttcgttgttgactcc |
35158521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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