View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_8 (Length: 565)
Name: NF19379_low_8
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 38092461 - 38092194
Alignment:
| Q |
15 |
ctggttttcttagtgtttggactttggtgggttccaacannnnnnn--aggtaaatctataagcatatcagttatttaactatattactaagatctactt |
112 |
Q |
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| T |
38092461 |
ctggttttcttagtgtttggactttggtgggttccaacatttttttttaggtaaatctataagcatatcagttatttaactatattactaagatctactt |
38092362 |
T |
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| Q |
113 |
agnnnnnnnnnctattaccaaagattcactatatcgacttaaaatgttttaaaaatgaaaggaagggttgatggaaacaggtggagggcatttcctaata |
212 |
Q |
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| T |
38092361 |
agaaaaaaaaattattatcaaagattcactatatcgacttaaaatgttttaaaaatgaaaggaagggttgatggaaacaggtggagggcatttcctaata |
38092262 |
T |
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| Q |
213 |
gatcattttcatttgatgactcattcaattgtaatccaacaactcattcatgttctgacatttccgtt |
280 |
Q |
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| T |
38092261 |
gatcattttcatttgatgactcattcaattgtaatccaacaactcattcatgttctgacatttccgtt |
38092194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 361 - 548
Target Start/End: Complemental strand, 38092127 - 38091937
Alignment:
| Q |
361 |
tcccaggcccaggctgcattatcttatgtaggtgtttttgtccttctactatcataaatcataaatgaattaatatttcctattatttttgggtacatgt |
460 |
Q |
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| T |
38092127 |
tcccaggcccaggctgcattatcttatgtaggtgtttttgtccttctactatcataaatcataaatgaattaatatttcctattatttttgggtacatgt |
38092028 |
T |
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| Q |
461 |
atatgttctagctagtcattggtcactcacacgttgaact---gttaagtgacacgttatggacgatgaatggggcttgttctgttgtgtc |
548 |
Q |
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| T |
38092027 |
atatgttctagctagtcattggtcactcacacgttgaactgtagtaaagtgacacgttatggatgatcaatggggcttgttctgttgtgtc |
38091937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 540
Target Start/End: Complemental strand, 38094671 - 38094552
Alignment:
| Q |
422 |
taaatgaattaatatttcctattatttttgggtacatgtatatgttctagctagtcattggtcactcacacgttgaactgt--taa-gtgacacgttatg |
518 |
Q |
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| T |
38094671 |
taaatgaatttatttttcctattatttttgg-tagatgtatgtact-tacttagtcattggtcagttacacgttgaattgtagtaacgtgacacgttatg |
38094574 |
T |
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| Q |
519 |
gacgatgaatggggcttgttct |
540 |
Q |
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| T |
38094573 |
gatgatgaatgggacttgttct |
38094552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 548
Target Start/End: Complemental strand, 38087587 - 38087510
Alignment:
| Q |
473 |
tagtcattggtcactcacacgttgaact---gttaagtgacacgttatggacgatgaatggggcttgttctgttgtgtc |
548 |
Q |
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| T |
38087587 |
tagtcattggtcagtcacacgttgaactgtagtaaagcgacacgttatggatgatcaatggggcttctt-tgttgtgtc |
38087510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 38087677 - 38087626
Alignment:
| Q |
361 |
tcccaggcccaggctgcattatcttatgtagg--tgtttttgtccttctact |
410 |
Q |
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| T |
38087677 |
tccctggcccaggtagcattatcttatgtaggggtgtttttgtccttctact |
38087626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 38087842 - 38087794
Alignment:
| Q |
228 |
atgactcattcaattgtaatccaacaactcattcatgttctgacatttc |
276 |
Q |
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| T |
38087842 |
atgactcatccaattgtaatccaacaacccactcacgttatgacatttc |
38087794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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