View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_81 (Length: 244)
Name: NF19379_low_81
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_81 |
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| [»] scaffold0281 (2 HSPs) |
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Alignment Details
Target: scaffold0281 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 20912 - 21086
Alignment:
| Q |
17 |
atattcatatcttcataatatggtgatattatctataacaatagtcatcaatacatatagatattattctttgttctggatttttatgtttccattatta |
116 |
Q |
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| T |
20912 |
atattcatatcttcataatatggtgatattatctataacaatagtcatcaatacatatagatattattctttgttctggatttttatgtttccattatta |
21011 |
T |
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| Q |
117 |
ccttttcattagtgtcggtgtttgaaacttttgtttcactacttccattatttcaaagaaaaaatcaatcattac |
191 |
Q |
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| T |
21012 |
cctttccattagtgtcggtgtttgaaacttttgtttcactacttccattatttcaaagaaaaaatcaatcattac |
21086 |
T |
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Target: scaffold0281; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 12410 - 12487
Alignment:
| Q |
17 |
atattcatatcttcataatatggtgatattatctataacaatagtcatcaatacatatagatattattctttgttctg |
94 |
Q |
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| T |
12410 |
atattcatatcttcataatatggtgatattatctataacaatagtcatcaatacatatagatattattctttgttctg |
12487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 31896798 - 31897009
Alignment:
| Q |
17 |
atattcatatcttcataatatggtgatattatctataacaatagtcatcaatacatatagatattattctttgttctggatttttatgtttccattatta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31896798 |
atattcatatcttcataatatggtgatattatctataacaatagtcatcaatacatatagatattattctttgttcttgatttttatgtttccattatta |
31896897 |
T |
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| Q |
117 |
ccttttcattagtgtcggtgtttgaaacttttgtttcactacttccattatttcaaagaaaaaatcaatcattacnnnnnnncagagaatgtggagattt |
216 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |
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| T |
31896898 |
cctttccattagtgtcggtgtttgaaacttttgtttcactacttccattatttcaaagaaaaaatcaatcattacaaaaaaacagacaatgtggagaatt |
31896997 |
T |
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| Q |
217 |
cttctcatttca |
228 |
Q |
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||| |||||||| |
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| T |
31896998 |
cttttcatttca |
31897009 |
T |
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