View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19379_low_83 (Length: 241)
Name: NF19379_low_83
Description: NF19379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19379_low_83 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 26413926 - 26413760
Alignment:
| Q |
75 |
catttcacatccaaatgaatccactctatgagattactatgnnnnnnnttcatgtctcactcatactatgtggcattacatttatgtaatctcttagcac |
174 |
Q |
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| T |
26413926 |
catttcacatccaaatgaatccactctatgagattactatgaaaaaaattcatgtctcactcatactatgtggcattacatttatgtaatctcttagcag |
26413827 |
T |
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| Q |
175 |
atcttgagttgtttcgacctcttctctgcagtaatcacataatggcatgcttaaatgcatcttactc |
241 |
Q |
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| T |
26413826 |
atcttgagttgttttgacctcttctctgcagtaatcacataatggcatgcttaaatgcatcttactc |
26413760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 26414025 - 26413957
Alignment:
| Q |
10 |
cttgatgcttctctttgttcctccaattccaaagatgatggcaagccaatgcccaatattctttccatt |
78 |
Q |
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| T |
26414025 |
cttgatgcttctctctgttcctccaattccaaagatgatggcaagccaatgcccaatattctttccatt |
26413957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 1536597 - 1536556
Alignment:
| Q |
18 |
ttctctttgttcctccaattccaaagatgatggcaagccaat |
59 |
Q |
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| T |
1536597 |
ttctctttgttcctccaattccaaagatgatggcaagccaat |
1536556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 1536394 - 1536336
Alignment:
| Q |
183 |
ttgtttcgacctcttctctgcagtaatcacataatggcatgcttaaatgcatcttactc |
241 |
Q |
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| T |
1536394 |
ttgtttcgacctcttctctgaagtaatcacagaacgggatgctcaaatgaatcttactc |
1536336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 1463567 - 1463612
Alignment:
| Q |
180 |
gagttgtttcgacctcttctctgcagtaatcacataatggcatgct |
225 |
Q |
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| T |
1463567 |
gagttgtttcaacctcttctctgaagtaatcacagaatggcatgct |
1463612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 1536515 - 1536427
Alignment:
| Q |
75 |
catttcacatccaaatgaatccactctatgagattactatgnnnnnnnttcatgtctc--actcatactatgtggcattacatttatgt |
161 |
Q |
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| T |
1536515 |
cattttacattcaaatgaatccactcaatgagattactatgaaaaaaaatcatgtctcagacttatactgtgtggcatgacatttatgt |
1536427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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